Variant report

Variant	rs11236324
Chromosome Location	chr11:74800600-74800601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11236327	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236328	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822464	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285310	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291071	0.94[AFR][1000 genomes]
rs12292266	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377508	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931888	0.91[AFR][1000 genomes]
rs7948122	0.91[AFR][1000 genomes]
rs7951337	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74794200-74802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74799400-74801800	Strong transcription	K562	blood
3	chr11:74800000-74800600	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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