Variant report

Variant	rs11236328
Chromosome Location	chr11:74807293-74807294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11236324	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236327	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822464	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291071	0.95[AFR][1000 genomes]
rs12292266	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377508	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113716	1.00[MEX][hapmap]
rs7118787	1.00[MEX][hapmap]
rs7931888	0.89[YRI][hapmap];0.93[AFR][1000 genomes]
rs7948122	0.93[AFR][1000 genomes]
rs7951337	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3478707	chr11:74782633-74842791	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv3478718	chr11:74782633-74842791	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74805800-74807400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:74805800-74807600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:74806400-74808800	Enhancers	Fetal Intestine Small	intestine
4	chr11:74806600-74811200	Weak transcription	A549	lung
5	chr11:74806600-74811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:74806800-74808000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:74806800-74811400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:74807000-74808000	Flanking Active TSS	Fetal Intestine Large	intestine
9	chr11:74807000-74808800	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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