Variant report

Variant	rs7118787
Chromosome Location	chr11:74608347-74608348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11236328	1.00[MEX][hapmap]
rs1344979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1549980	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133425	1.00[MEX][hapmap]
rs17133490	1.00[MEX][hapmap]
rs17133514	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3944290	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4309180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55757045	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57005054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60245702	1.00[AMR][1000 genomes]
rs60725765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103175	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106103	1.00[AMR][1000 genomes]
rs7108347	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109824	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110097	0.82[YRI][hapmap]
rs7111253	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113716	1.00[MEX][hapmap]
rs7114920	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121076	1.00[AMR][1000 genomes]
rs7123433	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125269	1.00[ASW][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7480268	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931098	1.00[AMR][1000 genomes]
rs7938354	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951337	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74587400-74611800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:74587400-74629600	Weak transcription	Gastric	stomach
3	chr11:74588400-74630600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:74588400-74636000	Weak transcription	NHLF	lung
5	chr11:74594800-74646600	Weak transcription	Small Intestine	intestine
6	chr11:74595800-74611800	Weak transcription	Brain Angular Gyrus	brain
7	chr11:74596400-74612000	Weak transcription	HSMM	muscle
8	chr11:74596800-74619000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:74598200-74609800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:74598200-74615200	Weak transcription	Osteobl	bone
11	chr11:74598400-74611800	Weak transcription	Dnd41	blood
12	chr11:74598400-74629600	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:74599000-74611800	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:74599200-74611600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:74599200-74619400	Weak transcription	Colonic Mucosa	Colon
16	chr11:74599400-74611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:74603200-74617800	Weak transcription	K562	blood
18	chr11:74603800-74616600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:74605000-74611800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:74605200-74608800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:74605600-74611600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:74606400-74611800	Weak transcription	Fetal Heart	heart
23	chr11:74606400-74612600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:74606600-74626400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:74606800-74616200	Weak transcription	NHEK	skin
26	chr11:74607000-74611600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:74607000-74611800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:74607200-74610200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:74607200-74618000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:74607400-74609400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:74607400-74613200	Weak transcription	Primary B cells from cord blood	blood
32	chr11:74607400-74617200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr11:74607600-74616400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:74607600-74616600	Weak transcription	Placenta	Placenta
35	chr11:74607600-74617200	Weak transcription	Thymus	Thymus
36	chr11:74607600-74618200	Weak transcription	Hela-S3	cervix
37	chr11:74607600-74637400	Weak transcription	Pancreas	Pancrea
38	chr11:74607800-74609000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:74607800-74610000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:74607800-74611000	Weak transcription	Fetal Intestine Small	intestine
41	chr11:74607800-74611000	Weak transcription	Fetal Stomach	stomach
42	chr11:74607800-74616200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:74607800-74616200	Weak transcription	Aorta	Aorta
44	chr11:74607800-74616400	Weak transcription	Primary T cells from cord blood	blood
45	chr11:74607800-74616400	Weak transcription	Left Ventricle	heart
46	chr11:74607800-74616400	Weak transcription	Lung	lung
47	chr11:74607800-74616600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:74607800-74618000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:74607800-74618000	Weak transcription	Ovary	ovary
50	chr11:74607800-74620800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links