Variant report

Variant	rs1344979
Chromosome Location	chr11:74619514-74619515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:74619500-74619650	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74617868..74619628-chr11:74622578..74625095,2	K562	blood:
2	chr11:74618753..74620565-chr11:74631821..74634471,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241170	TF binding region
XRRA1	TF binding region
ENSG00000241170	Chromatin interaction
ENSG00000166435	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1549980	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133514	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3944290	0.84[AFR][1000 genomes]
rs4309180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55757045	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57005054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60245702	1.00[AMR][1000 genomes]
rs60725765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103175	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7108347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109824	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111253	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114920	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121076	1.00[AMR][1000 genomes]
rs7123433	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125269	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7480268	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931098	1.00[AMR][1000 genomes]
rs7938354	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74587400-74629600	Weak transcription	Gastric	stomach
2	chr11:74588400-74630600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:74588400-74636000	Weak transcription	NHLF	lung
4	chr11:74594800-74646600	Weak transcription	Small Intestine	intestine
5	chr11:74598400-74629600	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:74606600-74626400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:74607600-74637400	Weak transcription	Pancreas	Pancrea
8	chr11:74607800-74620800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:74612200-74620600	Weak transcription	HSMM	muscle
10	chr11:74612400-74629600	Weak transcription	NHDF-Ad	bronchial
11	chr11:74612800-74621200	Weak transcription	Fetal Kidney	kidney
12	chr11:74612800-74634000	Weak transcription	Psoas Muscle	Psoas
13	chr11:74613000-74620200	Weak transcription	Fetal Heart	heart
14	chr11:74613400-74621000	Weak transcription	Brain Substantia Nigra	brain
15	chr11:74613400-74632600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:74613600-74624000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:74613600-74627800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:74613800-74628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:74613800-74637400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:74614200-74620800	Weak transcription	Brain Germinal Matrix	brain
21	chr11:74614400-74623000	Strong transcription	Fetal Intestine Small	intestine
22	chr11:74614600-74633600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:74615000-74629600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:74615000-74629600	Weak transcription	NH-A	brain
25	chr11:74615000-74636200	Weak transcription	A549	lung
26	chr11:74615200-74632600	Strong transcription	Liver	Liver
27	chr11:74615200-74637200	Weak transcription	HMEC	breast
28	chr11:74615400-74623600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:74615400-74626400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:74615600-74626600	Strong transcription	Dnd41	blood
31	chr11:74615800-74633600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:74615800-74644800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:74616000-74621200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:74616000-74622800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:74616000-74634200	Strong transcription	Duodenum Mucosa	Duodenum
36	chr11:74616000-74634800	Strong transcription	Fetal Intestine Large	intestine
37	chr11:74616200-74626800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:74616200-74634000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:74616400-74621400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:74616400-74622200	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr11:74616400-74623600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr11:74616400-74633600	Strong transcription	Stomach Smooth Muscle	stomach
43	chr11:74616400-74634400	Strong transcription	Primary T cells from cord blood	blood
44	chr11:74616400-74646000	Weak transcription	Spleen	Spleen
45	chr11:74616400-74656200	Weak transcription	Stomach Mucosa	stomach
46	chr11:74616600-74622200	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:74616600-74622400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:74616600-74623200	Strong transcription	Adipose Nuclei	Adipose
49	chr11:74616600-74623400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:74616600-74629200	Weak transcription	Fetal Thymus	thymus

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