Variant report

Variant	rs60725765
Chromosome Location	chr11:74597632-74597633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1344979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1549980	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4309180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55757045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57005054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60245702	1.00[AMR][1000 genomes]
rs7103175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103489	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106103	1.00[AMR][1000 genomes]
rs7108347	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118787	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121076	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123433	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7480268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931098	1.00[AMR][1000 genomes]
rs7938354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74583800-74598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:74585000-74597800	Weak transcription	NHEK	skin
3	chr11:74586400-74604800	Weak transcription	Fetal Heart	heart
4	chr11:74587000-74598600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:74587000-74600400	Weak transcription	HUVEC	blood vessel
6	chr11:74587400-74598600	Weak transcription	Spleen	Spleen
7	chr11:74587400-74611800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:74587400-74629600	Weak transcription	Gastric	stomach
9	chr11:74587800-74597800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:74587800-74598600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:74588400-74597800	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:74588400-74601800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:74588400-74605400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:74588400-74606200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:74588400-74630600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:74588400-74636000	Weak transcription	NHLF	lung
17	chr11:74591800-74606000	Weak transcription	Right Ventricle	heart
18	chr11:74594200-74598000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:74594400-74598800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
20	chr11:74594400-74598800	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr11:74594400-74599200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr11:74594400-74599200	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr11:74594400-74599400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:74594400-74599400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:74594400-74600000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
26	chr11:74594400-74600000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:74594600-74597800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:74594600-74598000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr11:74594600-74598000	ZNF genes & repeats	Fetal Lung	lung
30	chr11:74594600-74598400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:74594600-74599200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:74594600-74599200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr11:74594600-74599200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr11:74594600-74599600	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr11:74594800-74646600	Weak transcription	Small Intestine	intestine
36	chr11:74595000-74598800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:74595600-74597800	Weak transcription	Colon Smooth Muscle	Colon
38	chr11:74595600-74598000	ZNF genes & repeats	Primary T cells from cord blood	blood
39	chr11:74595600-74598000	Weak transcription	A549	lung
40	chr11:74595600-74598200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:74595600-74606600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:74595800-74597800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:74595800-74598400	Weak transcription	Ovary	ovary
44	chr11:74595800-74605200	Weak transcription	Brain Anterior Caudate	brain
45	chr11:74595800-74611800	Weak transcription	Brain Angular Gyrus	brain
46	chr11:74596000-74599200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
47	chr11:74596200-74597800	Weak transcription	Colonic Mucosa	Colon
48	chr11:74596200-74597800	Weak transcription	Left Ventricle	heart
49	chr11:74596200-74597800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:74596200-74597800	Weak transcription	Osteobl	bone

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