Variant report

Variant	rs7125269
Chromosome Location	chr11:74562917-74562918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1344979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1549980	1.00[ASW][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3944290	1.00[YRI][hapmap]
rs4309180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55757045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57005054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60245702	1.00[AMR][1000 genomes]
rs60725765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103489	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106103	1.00[AMR][1000 genomes]
rs7108347	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109824	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110097	0.82[YRI][hapmap]
rs7111253	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118787	1.00[ASW][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121076	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123433	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7480268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931098	1.00[AMR][1000 genomes]
rs7938354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
2	chr11:74543800-74565800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:74544200-74570800	Strong transcription	Duodenum Mucosa	Duodenum
4	chr11:74545600-74564600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr11:74545600-74568400	Strong transcription	Fetal Intestine Large	intestine
6	chr11:74545800-74565000	Strong transcription	Fetal Muscle Leg	muscle
7	chr11:74546000-74566800	Strong transcription	Fetal Stomach	stomach
8	chr11:74547600-74571400	Weak transcription	Fetal Brain Male	brain
9	chr11:74549400-74567600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:74550600-74564600	Strong transcription	Fetal Intestine Small	intestine
11	chr11:74551000-74568400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:74552600-74565400	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr11:74552800-74576800	Strong transcription	Stomach Smooth Muscle	stomach
14	chr11:74553800-74569400	Weak transcription	Fetal Heart	heart
15	chr11:74554200-74567600	Weak transcription	Psoas Muscle	Psoas
16	chr11:74554800-74571600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:74555800-74569800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:74558200-74563400	Strong transcription	Rectal Smooth Muscle	rectum
19	chr11:74558200-74564400	Strong transcription	Thymus	Thymus
20	chr11:74558200-74564600	Strong transcription	Dnd41	blood
21	chr11:74558200-74565200	Strong transcription	Colonic Mucosa	Colon
22	chr11:74558400-74564000	Strong transcription	Fetal Brain Female	brain
23	chr11:74558400-74564200	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:74558400-74564600	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr11:74558600-74563400	Strong transcription	Brain Anterior Caudate	brain
26	chr11:74558600-74563400	Strong transcription	Left Ventricle	heart
27	chr11:74558600-74563600	Strong transcription	Placenta	Placenta
28	chr11:74558600-74565000	Strong transcription	Primary T cells from cord blood	blood
29	chr11:74558600-74565800	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:74558800-74564600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:74558800-74565400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:74558800-74567400	Weak transcription	Small Intestine	intestine
33	chr11:74559000-74571400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:74559200-74565400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:74559200-74571400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr11:74559200-74571800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:74559400-74570000	Weak transcription	Right Ventricle	heart
38	chr11:74560200-74564800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:74560200-74569800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:74560400-74564000	Strong transcription	Brain Germinal Matrix	brain
41	chr11:74560400-74565400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:74560600-74563400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:74560600-74564800	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr11:74560600-74571200	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:74560800-74564600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr11:74561000-74564200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:74561000-74564600	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:74561000-74567800	Weak transcription	Brain Angular Gyrus	brain
49	chr11:74561200-74563000	Enhancers	NHDF-Ad	bronchial
50	chr11:74561200-74563400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links