Variant report

Variant	rs7109824
Chromosome Location	chr11:74588103-74588104
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1344979	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1549980	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133425	1.00[MEX][hapmap]
rs17133490	1.00[MEX][hapmap]
rs17133514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3944290	1.00[YRI][hapmap]
rs4309180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55757045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57005054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60245702	1.00[AMR][1000 genomes]
rs60725765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103489	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106103	1.00[AMR][1000 genomes]
rs7108347	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110097	0.82[YRI][hapmap]
rs7111253	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113716	1.00[MEX][hapmap]
rs7114920	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118787	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121076	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123433	0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125269	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7480268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931098	1.00[AMR][1000 genomes]
rs7938354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74562200-74595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:74569800-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:74570000-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:74570600-74588400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr11:74571000-74588400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr11:74573600-74588400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:74574200-74588400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr11:74575600-74588400	ZNF genes & repeats	Liver	Liver
9	chr11:74580600-74588200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:74581000-74588400	ZNF genes & repeats	Fetal Lung	lung
11	chr11:74582800-74588200	Weak transcription	NH-A	brain
12	chr11:74583000-74588400	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr11:74583200-74594600	Weak transcription	Hela-S3	cervix
14	chr11:74583200-74595200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr11:74583400-74588400	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr11:74583600-74588200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:74583600-74588400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:74583800-74588200	Strong transcription	Brain Angular Gyrus	brain
19	chr11:74583800-74588200	Strong transcription	Brain Anterior Caudate	brain
20	chr11:74583800-74588200	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:74583800-74595200	Weak transcription	Fetal Thymus	thymus
22	chr11:74583800-74598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:74584000-74588400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:74584000-74594400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:74584000-74594600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr11:74584000-74594600	Weak transcription	Pancreas	Pancrea
27	chr11:74584400-74588400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:74584400-74588600	Strong transcription	Placenta	Placenta
29	chr11:74584800-74588400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:74584800-74594400	Weak transcription	Thymus	Thymus
31	chr11:74584800-74594600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:74584800-74594600	Weak transcription	Fetal Kidney	kidney
33	chr11:74584800-74594600	Weak transcription	Small Intestine	intestine
34	chr11:74584800-74595800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:74585000-74597800	Weak transcription	NHEK	skin
36	chr11:74585400-74588400	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr11:74585600-74588400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:74585600-74588400	Strong transcription	Brain Inferior Temporal Lobe	brain
39	chr11:74585800-74588400	Strong transcription	Primary B cells from cord blood	blood
40	chr11:74585800-74588400	Strong transcription	Fetal Intestine Large	intestine
41	chr11:74585800-74594600	Weak transcription	Colonic Mucosa	Colon
42	chr11:74586000-74588400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
43	chr11:74586000-74588400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:74586000-74588400	Strong transcription	HSMM	muscle
45	chr11:74586000-74595200	Weak transcription	HSMMtube	muscle
46	chr11:74586200-74588400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
47	chr11:74586200-74594600	Weak transcription	Colon Smooth Muscle	Colon
48	chr11:74586400-74588400	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:74586400-74604800	Weak transcription	Fetal Heart	heart
50	chr11:74586600-74588400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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