Variant report

Variant	rs7103175
Chromosome Location	chr11:74461775-74461776
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr11:74461502-74461990	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74453289..74457790-chr11:74458093..74463010,5	K562	blood:
2	chr11:74461533..74463944-chr11:74481834..74484719,2	K562	blood:
3	chr11:74412387..74415064-chr11:74461763..74463949,2	MCF-7	breast:
4	chr11:74442119..74444893-chr11:74459979..74461789,2	MCF-7	breast:
5	chr11:74415504..74417027-chr11:74459912..74462866,2	K562	blood:
6	chr11:74457724..74462703-chr11:74463031..74468958,12	K562	blood:
7	chr11:74461612..74463944-chr11:74482414..74484719,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000227615	TF binding region
ENSG00000227615	Chromatin interaction
ENSG00000054938	Chromatin interaction
ENSG00000264095	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1344979	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1549980	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17133514	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4309180	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55757045	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773510	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56059110	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57005054	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60725765	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103489	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7106103	1.00[AMR][1000 genomes]
rs7108347	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109824	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118787	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7480268	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7931098	1.00[AMR][1000 genomes]
rs7938354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
7	esv1840811	chr11:74452658-74488369	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74459600-74462000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:74460000-74462200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:74460400-74461800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr11:74461000-74461800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:74461000-74462000	Enhancers	Placenta	Placenta
6	chr11:74461200-74462200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr11:74461200-74462200	Enhancers	Pancreas	Pancrea
8	chr11:74461200-74462400	Enhancers	Primary B cells from peripheral blood	blood
9	chr11:74461200-74462400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:74461200-74462400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:74461200-74462400	Enhancers	Fetal Brain Male	brain
12	chr11:74461200-74462600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr11:74461200-74462600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr11:74461200-74462600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:74461200-74462600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr11:74461200-74462600	Enhancers	Liver	Liver
17	chr11:74461200-74462600	Enhancers	Fetal Lung	lung
18	chr11:74461200-74462800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:74461200-74465600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:74461200-74465600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:74461200-74465600	Weak transcription	Gastric	stomach
22	chr11:74461200-74465600	Weak transcription	Left Ventricle	heart
23	chr11:74461200-74465600	Weak transcription	Small Intestine	intestine
24	chr11:74461200-74465800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:74461200-74465800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:74461200-74466000	Weak transcription	Fetal Kidney	kidney
27	chr11:74461200-74466200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:74461200-74466600	Weak transcription	Right Ventricle	heart
29	chr11:74461200-74479400	Weak transcription	Spleen	Spleen
30	chr11:74461400-74461800	Enhancers	Primary T cells from cord blood	blood
31	chr11:74461400-74461800	Enhancers	Rectal Smooth Muscle	rectum
32	chr11:74461400-74462000	Weak transcription	Esophagus	oesophagus
33	chr11:74461400-74462000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:74461400-74462200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr11:74461400-74462200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr11:74461400-74462200	Enhancers	Fetal Muscle Leg	muscle
37	chr11:74461400-74462600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:74461400-74463000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:74461400-74463200	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr11:74461400-74464400	Weak transcription	HSMM	muscle
41	chr11:74461400-74464600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:74461400-74464800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:74461400-74464800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:74461400-74464800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:74461400-74464800	Weak transcription	Brain Substantia Nigra	brain
46	chr11:74461400-74465000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:74461400-74465200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:74461400-74465200	Weak transcription	Brain Anterior Caudate	brain
49	chr11:74461400-74465800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:74461400-74465800	Weak transcription	Brain Inferior Temporal Lobe	brain

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