Variant report
| Variant | rs7948122 |
|---|---|
| Chromosome Location | chr11:74822708-74822709 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162139 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11236324 | 0.91[AFR][1000 genomes] |
| rs11236327 | 0.93[AFR][1000 genomes] |
| rs11236328 | 0.93[AFR][1000 genomes] |
| rs11822464 | 0.93[AFR][1000 genomes] |
| rs12285310 | 0.84[AFR][1000 genomes] |
| rs12291071 | 0.93[AFR][1000 genomes] |
| rs12292266 | 0.84[AFR][1000 genomes] |
| rs7931888 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7951337 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3478707 | chr11:74782633-74842791 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv3478718 | chr11:74782633-74842791 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
