Variant report

Variant	rs11236411
Chromosome Location	chr11:75081208-75081209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75061282..75063321-chr11:75080294..75083043,2	K562	blood:
2	chr11:75056296..75059058-chr11:75079339..75081796,2	MCF-7	breast:
3	chr11:75062502..75064069-chr11:75081133..75083149,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10899087	0.91[EUR][1000 genomes]
rs11236404	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236406	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236409	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236410	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236414	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827957	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270709	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278562	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280035	0.84[YRI][hapmap]
rs12293208	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797588	0.85[CEU][hapmap]
rs34786358	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35281674	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4509790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123202	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929742	0.91[EUR][1000 genomes]
rs7931083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:75077200-75083000	Weak transcription	Fetal Lung	lung
3	chr11:75077600-75083200	Weak transcription	Adipose Nuclei	Adipose
4	chr11:75077800-75081600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:75078200-75082800	Weak transcription	K562	blood
6	chr11:75079200-75083000	Weak transcription	Placenta	Placenta
7	chr11:75080200-75081400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr11:75080400-75081400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr11:75080400-75081400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:75080600-75081400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr11:75080600-75081400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:75080600-75081600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr11:75080600-75083600	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:75080800-75081400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr11:75080800-75081400	Enhancers	HUVEC	blood vessel
16	chr11:75080800-75081800	Enhancers	Stomach Mucosa	stomach
17	chr11:75081000-75082400	Weak transcription	Colonic Mucosa	Colon
18	chr11:75081000-75083200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:75081200-75081400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
20	chr11:75081200-75081800	Bivalent Enhancer	A549	lung
21	chr11:75081200-75082000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:75081200-75082800	Weak transcription	Hela-S3	cervix
23	chr11:75081200-75083000	Weak transcription	Liver	Liver
24	chr11:75081200-75083000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:75081200-75083000	Weak transcription	Spleen	Spleen
26	chr11:75081200-75083400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:75081200-75083600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:75081200-75084000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr11:75081200-75086600	Weak transcription	Gastric	stomach
30	chr11:75081200-75095200	Weak transcription	Dnd41	blood

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