Variant report

Variant	rs12270709
Chromosome Location	chr11:75079586-75079587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75056296..75059058-chr11:75079339..75081796,2	MCF-7	breast:
2	chr11:75061482..75063313-chr11:75077866..75079775,4	MCF-7	breast:
3	chr11:75076999..75080604-chr11:75081592..75085575,3	MCF-7	breast:
4	chr11:75073760..75076326-chr11:75079019..75081067,2	K562	blood:

Variant related genes	Relation type
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899087	0.83[EUR][1000 genomes]
rs11236404	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236406	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236408	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236410	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236414	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274798	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293208	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35281674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4509790	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123202	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929742	0.83[EUR][1000 genomes]
rs7931083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
3	nsv516556	chr11:75071783-75080920	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:75068800-75080800	Weak transcription	Spleen	Spleen
3	chr11:75076000-75080400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:75076000-75080600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:75076000-75080800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:75077200-75083000	Weak transcription	Fetal Lung	lung
7	chr11:75077400-75080800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:75077600-75080600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:75077600-75080600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:75077600-75083200	Weak transcription	Adipose Nuclei	Adipose
11	chr11:75077800-75081600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:75078000-75080600	Weak transcription	Primary B cells from cord blood	blood
13	chr11:75078200-75080800	Weak transcription	Stomach Mucosa	stomach
14	chr11:75078200-75082800	Weak transcription	K562	blood
15	chr11:75078400-75080600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr11:75078400-75080800	Weak transcription	Hela-S3	cervix
17	chr11:75078600-75080000	Enhancers	Dnd41	blood
18	chr11:75078800-75080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:75079200-75083000	Weak transcription	Placenta	Placenta
20	chr11:75079400-75080400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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