Variant report

Variant	rs35281674
Chromosome Location	chr11:75084407-75084408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75071158..75073048-chr11:75082961..75084761,2	MCF-7	breast:
2	chr11:75083067..75087216-chr11:75110418..75113000,3	MCF-7	breast:
3	chr11:75077164..75078876-chr11:75082992..75084956,2	MCF-7	breast:
4	chr11:74990992..74993590-chr11:75084263..75086494,2	K562	blood:
5	chr11:75060348..75063888-chr11:75083916..75089627,7	K562	blood:
6	chr11:75045542..75048655-chr11:75083348..75085399,3	MCF-7	breast:
7	chr11:74990992..74994915-chr11:75082766..75086494,3	K562	blood:
8	chr11:75053225..75057197-chr11:75082707..75085103,4	MCF-7	breast:
9	chr11:75076999..75080604-chr11:75081592..75085575,3	MCF-7	breast:
10	chr11:75060299..75064917-chr11:75081328..75085491,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000199090	Chromatin interaction
ENSG00000137486	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899087	0.90[EUR][1000 genomes]
rs11236404	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236406	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236408	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236409	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236411	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236414	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828411	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270709	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274798	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293208	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34786358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4509790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123202	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929742	0.90[EUR][1000 genomes]
rs7931083	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv832211	chr11:74945839-75106125	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75064200-75086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:75081200-75086600	Weak transcription	Gastric	stomach
3	chr11:75081200-75095200	Weak transcription	Dnd41	blood
4	chr11:75081400-75091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:75082400-75084600	Enhancers	Colonic Mucosa	Colon
6	chr11:75082600-75084600	Enhancers	Fetal Intestine Large	intestine
7	chr11:75082600-75084600	Enhancers	HepG2	liver
8	chr11:75082800-75085000	Enhancers	Stomach Mucosa	stomach
9	chr11:75082800-75087600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:75083000-75087800	Enhancers	Placenta	Placenta
11	chr11:75083400-75086600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:75083400-75087200	Weak transcription	Spleen	Spleen
13	chr11:75083600-75091000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:75083600-75094200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:75083800-75084800	Enhancers	Duodenum Mucosa	Duodenum
16	chr11:75083800-75084800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr11:75083800-75085000	Enhancers	Hela-S3	cervix
18	chr11:75083800-75086800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:75083800-75091800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:75083800-75092000	Weak transcription	Adipose Nuclei	Adipose
21	chr11:75083800-75099400	Weak transcription	Right Atrium	heart
22	chr11:75084000-75086000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:75084000-75090200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:75084000-75091600	Weak transcription	K562	blood
25	chr11:75084000-75091800	Weak transcription	Liver	Liver
26	chr11:75084200-75087200	Weak transcription	Fetal Intestine Small	intestine
27	chr11:75084400-75085400	Weak transcription	A549	lung

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