Variant report

Variant	rs11236463
Chromosome Location	chr11:75309286-75309287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr11:75308492-75309351	SK-N-SH	brain:	n/a	chr11:75308871-75308885
2	RAD21	chr11:75308498-75309332	SK-N-SH	brain:	n/a	chr11:75308870-75308889
3	CTCF	chr11:75308379-75309410	SK-N-SH	brain:	n/a	chr11:75308870-75308886 chr11:75308869-75308887 chr11:75308874-75308882 chr11:75308871-75308892

No.	Distal block	Cell Line	Cell type
1	chr11:75308657..75309328-chr11:75514029..75514891,2	MCF-7	breast:
2	chr11:75272209..75273815-chr11:75308377..75311423,3	MCF-7	breast:
3	chr11:75308426..75309326-chr11:75511889..75512461,3	MCF-7	breast:
4	chr11:75308811..75309383-chr11:75417094..75418075,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255434	TF binding region
ENSG00000254814	Chromatin interaction
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11236462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274118	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275382	1.00[AMR][1000 genomes]
rs12978	1.00[AMR][1000 genomes]
rs58440786	1.00[AMR][1000 genomes]
rs73504526	1.00[AMR][1000 genomes]
rs73505003	1.00[AMR][1000 genomes]
rs73505007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75295400-75329600	Weak transcription	Aorta	Aorta
2	chr11:75295600-75310800	Weak transcription	Right Atrium	heart
3	chr11:75295600-75314200	Weak transcription	Lung	lung
4	chr11:75295800-75316400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:75296600-75321000	Weak transcription	Ovary	ovary
6	chr11:75301600-75313800	Weak transcription	Fetal Lung	lung
7	chr11:75302800-75312600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:75305000-75328800	Weak transcription	Pancreas	Pancrea
9	chr11:75305200-75309400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:75305600-75316000	Weak transcription	Brain Angular Gyrus	brain
11	chr11:75305800-75313400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:75305800-75316000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:75306000-75326200	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:75306000-75326200	Weak transcription	Brain Substantia Nigra	brain
16	chr11:75306200-75312600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:75306400-75312600	Weak transcription	Fetal Stomach	stomach
18	chr11:75306400-75313400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:75306400-75323600	Weak transcription	Spleen	Spleen
20	chr11:75306600-75309600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:75306600-75324200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:75307000-75316000	Weak transcription	Brain Anterior Caudate	brain
23	chr11:75307800-75309600	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:75307800-75310200	Enhancers	Fetal Intestine Small	intestine
25	chr11:75308400-75309800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:75308800-75310200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:75309000-75309400	Enhancers	Fetal Heart	heart
28	chr11:75309000-75309600	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr11:75309000-75309800	Weak transcription	Fetal Brain Female	brain
30	chr11:75309000-75310800	Enhancers	Fetal Intestine Large	intestine
31	chr11:75309200-75314200	Weak transcription	Fetal Brain Male	brain
32	chr11:75309200-75314200	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:75309200-75316600	Weak transcription	Brain Germinal Matrix	brain
34	chr11:75309200-75320800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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