Variant report

Variant	rs12274118
Chromosome Location	chr11:75365039-75365040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75363830..75367510-chr11:75368962..75372910,4	K562	blood:
2	chr11:75364181..75366383-chr11:75370266..75372144,2	MCF-7	breast:
3	chr11:75362323..75365214-chr11:75375705..75377919,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11236462	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236463	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275382	1.00[AMR][1000 genomes]
rs12978	1.00[AMR][1000 genomes]
rs58440786	1.00[AMR][1000 genomes]
rs73504526	1.00[AMR][1000 genomes]
rs73505003	1.00[AMR][1000 genomes]
rs73505007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75351600-75366600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:75353800-75366400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75355000-75366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:75355200-75366400	Weak transcription	Fetal Brain Male	brain
5	chr11:75357000-75365200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:75362000-75366400	Weak transcription	Fetal Brain Female	brain
7	chr11:75362200-75368600	Enhancers	HSMMtube	muscle
8	chr11:75363000-75366600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:75363200-75365400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:75363200-75367600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:75363400-75366600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:75363600-75366400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:75364000-75367600	Enhancers	Osteobl	bone
14	chr11:75364000-75368000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:75364000-75368000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:75364000-75368000	Enhancers	HMEC	breast
17	chr11:75364200-75367800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:75364200-75367800	Enhancers	HSMM	muscle
19	chr11:75364200-75368200	Enhancers	NHEK	skin
20	chr11:75364400-75365600	Enhancers	Stomach Mucosa	stomach
21	chr11:75364400-75366600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:75364400-75366600	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:75364400-75366800	Weak transcription	Brain Angular Gyrus	brain
24	chr11:75364400-75368200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:75364400-75368200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:75364600-75365800	Weak transcription	NHDF-Ad	bronchial
27	chr11:75364600-75367000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:75364600-75368000	Enhancers	Fetal Heart	heart
29	chr11:75364600-75378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:75365000-75365400	Enhancers	GM12878-XiMat	blood

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