Variant report

Variant	rs58440786
Chromosome Location	chr11:75242300-75242301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75157548..75159982-chr11:75241722..75243630,2	K562	blood:
2	chr11:75118946..75121248-chr11:75242299..75245442,3	K562	blood:
3	chr11:75156709..75158451-chr11:75242252..75245079,2	K562	blood:
4	chr11:75109127..75114185-chr11:75239683..75247189,11	K562	blood:
5	chr11:75237299..75240439-chr11:75240867..75243986,5	MCF-7	breast:
6	chr11:75156553..75158071-chr11:75242156..75244812,2	MCF-7	breast:
7	chr11:75242054..75243763-chr11:75252230..75254099,2	K562	blood:
8	chr11:75155972..75157916-chr11:75241757..75244067,16	K562	blood:
9	chr11:75141560..75143246-chr11:75240789..75242613,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000149243	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11236462	1.00[AMR][1000 genomes]
rs11236463	1.00[AMR][1000 genomes]
rs12274118	1.00[AMR][1000 genomes]
rs12275382	1.00[AMR][1000 genomes]
rs12978	1.00[AMR][1000 genomes]
rs73499047	0.81[AFR][1000 genomes]
rs73504526	1.00[AMR][1000 genomes]
rs73505003	1.00[AMR][1000 genomes]
rs73505007	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75237600-75243400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:75237600-75245800	Weak transcription	Right Ventricle	heart
3	chr11:75237800-75242600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:75237800-75243200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:75237800-75243200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:75237800-75243200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:75237800-75243200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:75237800-75243200	Weak transcription	Hela-S3	cervix
9	chr11:75237800-75243200	Weak transcription	HUVEC	blood vessel
10	chr11:75237800-75243400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:75237800-75243600	Enhancers	HepG2	liver
12	chr11:75237800-75245000	Weak transcription	Adipose Nuclei	Adipose
13	chr11:75237800-75245400	Weak transcription	Fetal Lung	lung
14	chr11:75237800-75258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:75238000-75242400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:75238000-75242600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:75238000-75242600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:75238000-75243000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:75238000-75243000	Weak transcription	A549	lung
20	chr11:75238000-75243200	Weak transcription	Primary T cells from cord blood	blood
21	chr11:75238000-75243200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr11:75238000-75243200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:75238000-75243200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:75238000-75243200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:75238000-75243200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:75238000-75243200	Weak transcription	Fetal Intestine Small	intestine
27	chr11:75238000-75245000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:75238000-75245400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:75238000-75248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:75239600-75244800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:75239800-75242400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:75239800-75245000	Weak transcription	Fetal Intestine Large	intestine
33	chr11:75239800-75245200	Weak transcription	GM12878-XiMat	blood
34	chr11:75240000-75242600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:75240000-75243200	Weak transcription	Placenta	Placenta
36	chr11:75240200-75242600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr11:75240200-75243000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:75240400-75243000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:75240400-75243600	Enhancers	Spleen	Spleen
40	chr11:75240800-75242600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:75241200-75243600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:75241400-75242400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:75241400-75242800	Weak transcription	K562	blood
44	chr11:75241600-75243400	Weak transcription	Left Ventricle	heart
45	chr11:75241600-75243400	Weak transcription	HSMMtube	muscle
46	chr11:75241800-75243200	Weak transcription	Fetal Heart	heart
47	chr11:75242000-75243200	Enhancers	H1 Cell Line	embryonic stem cell
48	chr11:75242200-75245000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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