Variant report
| Variant | rs11236520 |
|---|---|
| Chromosome Location | chr11:75460669-75460670 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:75443297..75446374-chr11:75458769..75461045,3 | MCF-7 | breast: | |
| 2 | chr11:75439128..75441333-chr11:75459340..75460882,2 | K562 | blood: | |
| 3 | chr11:75456131..75461031-chr11:75477180..75480155,4 | MCF-7 | breast: | |
| 4 | chr11:75459388..75460971-chr11:75496714..75498244,2 | MCF-7 | breast: | |
| 5 | chr11:75453248..75454833-chr11:75458597..75461064,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000062282 | Chromatin interaction |
| ENSG00000247867 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10160802 | 0.87[AMR][1000 genomes] |
| rs10793124 | 0.80[AMR][1000 genomes] |
| rs10793125 | 0.80[AMR][1000 genomes] |
| rs10793127 | 0.86[AMR][1000 genomes] |
| rs10793129 | 0.84[AMR][1000 genomes] |
| rs10793130 | 0.86[AMR][1000 genomes] |
| rs10899112 | 0.87[AMR][1000 genomes] |
| rs10899115 | 0.83[AMR][1000 genomes] |
| rs11236519 | 0.91[AMR][1000 genomes] |
| rs11236525 | 0.84[AMR][1000 genomes] |
| rs11236527 | 0.83[AMR][1000 genomes] |
| rs11236528 | 0.80[AMR][1000 genomes] |
| rs2008476 | 0.83[AMR][1000 genomes] |
| rs28802056 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3381903 | chr11:75123498-75587233 | Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 81 gene(s) | inside rSNPs | diseases |
| 2 | nsv897924 | chr11:75424546-75678647 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 3 | nsv897925 | chr11:75456134-75556323 | Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:75459600-75470200 | Weak transcription | Stomach Mucosa | stomach |
