Variant report

Variant	rs11236527
Chromosome Location	chr11:75469310-75469311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75468579..75469332-chr17:58553225..58553917,2	MCF-7	breast:
2	chr11:75455929..75459319-chr11:75467607..75470163,3	MCF-7	breast:
3	chr11:75465842..75467360-chr11:75469003..75470528,2	MCF-7	breast:

Extended variants
information (count: 138 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs10160784	0.80[ASN][1000 genomes]
rs10160802	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1017713	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.82[TSI][hapmap];0.94[ASN][1000 genomes]
rs10219339	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10793124	0.91[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793125	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793126	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793127	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793128	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10793129	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10793130	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10793132	0.90[CEU][hapmap];0.93[CHB][hapmap];0.91[ASN][1000 genomes]
rs10793133	0.91[ASN][1000 genomes]
rs10793135	0.90[CEU][hapmap]
rs10899105	0.85[ASN][1000 genomes]
rs10899109	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899110	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899112	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10899113	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899114	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10899115	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10899116	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899118	0.90[CEU][hapmap];0.85[MEX][hapmap];0.85[AMR][1000 genomes]
rs10899119	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs10899120	0.94[ASN][1000 genomes]
rs10899121	0.90[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10899122	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10899123	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10899124	0.90[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs10899127	0.89[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs10899128	0.90[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs10899129	0.90[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs10899131	0.91[ASN][1000 genomes]
rs10899132	0.91[ASN][1000 genomes]
rs10899133	0.91[ASN][1000 genomes]
rs10899134	0.90[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs10899135	0.91[ASN][1000 genomes]
rs10899136	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs10899137	0.91[ASN][1000 genomes]
rs10899138	0.89[CEU][hapmap];0.92[CHB][hapmap];0.87[ASN][1000 genomes]
rs10899139	0.87[ASN][1000 genomes]
rs10899140	0.87[ASN][1000 genomes]
rs10899141	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs10899142	0.87[ASN][1000 genomes]
rs10899144	0.84[ASN][1000 genomes]
rs10899145	0.90[CEU][hapmap];0.93[CHB][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs11236507	0.84[ASN][1000 genomes]
rs11236508	0.85[ASN][1000 genomes]
rs11236509	0.85[ASN][1000 genomes]
rs11236511	0.93[CHB][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.86[ASN][1000 genomes]
rs11236514	0.91[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236515	0.91[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236516	0.91[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236517	0.90[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236518	0.91[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236519	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236520	0.83[AMR][1000 genomes]
rs11236525	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11236526	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11236528	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236530	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs11236531	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11236533	0.90[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11236534	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs11236537	0.90[ASN][1000 genomes]
rs11236538	0.91[ASN][1000 genomes]
rs11236539	0.91[ASN][1000 genomes]
rs11236540	0.90[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.91[ASN][1000 genomes]
rs11236542	0.91[ASN][1000 genomes]
rs11236543	0.91[ASN][1000 genomes]
rs11236545	0.89[CEU][hapmap];0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs11236546	0.89[CEU][hapmap];0.93[CHB][hapmap];0.91[ASN][1000 genomes]
rs11236549	0.86[CEU][hapmap];0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs11236551	0.87[ASN][1000 genomes]
rs11236552	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11236553	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11236554	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11236555	0.90[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs11501918	0.93[ASN][1000 genomes]
rs11821808	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11822903	0.92[CHB][hapmap];0.92[ASN][1000 genomes]
rs11823869	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs12222542	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12222995	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.82[TSI][hapmap];0.94[ASN][1000 genomes]
rs12224062	0.87[ASN][1000 genomes]
rs12278224	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs12278257	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs12280456	0.81[CEU][hapmap]
rs12280464	0.81[CEU][hapmap]
rs12285853	0.91[ASN][1000 genomes]
rs1458836	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs17134394	0.90[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs1806895	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2004638	1.00[CEU][hapmap]
rs2008476	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168947	0.90[CEU][hapmap];0.92[MEX][hapmap];0.85[AMR][1000 genomes]
rs28802056	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3060	0.90[CEU][hapmap];0.92[MEX][hapmap]
rs36016715	0.83[ASN][1000 genomes]
rs3740849	0.90[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];0.92[ASN][1000 genomes]
rs3740850	0.90[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs499974	0.80[ASN][1000 genomes]
rs531117	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs559355	0.80[ASN][1000 genomes]
rs57188913	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58340821	0.94[ASN][1000 genomes]
rs58411334	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59913369	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs600518	0.80[ASN][1000 genomes]
rs600626	0.80[ASN][1000 genomes]
rs60677263	0.94[ASN][1000 genomes]
rs60692776	0.85[ASN][1000 genomes]
rs643884	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs644361	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs6592615	0.90[CEU][hapmap];0.93[CHB][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs66784596	0.81[ASN][1000 genomes]
rs67233017	0.81[ASN][1000 genomes]
rs67268976	0.81[ASN][1000 genomes]
rs7101806	0.90[CEU][hapmap];0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs7106736	0.91[ASN][1000 genomes]
rs7107742	0.90[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap]
rs7108178	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs7110517	0.91[ASN][1000 genomes]
rs7118039	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs7118293	0.93[ASN][1000 genomes]
rs7122123	0.87[ASN][1000 genomes]
rs7126727	0.90[CEU][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7128716	0.91[ASN][1000 genomes]
rs72995678	0.85[ASN][1000 genomes]
rs72997616	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72997623	0.92[ASN][1000 genomes]
rs7933235	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs7944950	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7947418	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs7947512	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11236527	DGAT2	cis	Whole Blood	GTEx
rs11236527	ARAP1	cis	parietal	SCAN
rs11236527	SLC43A2	trans	parietal	SCAN
rs11236527	B3GNT6	cis	parietal	SCAN
rs11236527	POLD3	cis	cerebellum	SCAN
rs11236527	RP11-535A19.1	cis	Whole Blood	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75459600-75470200	Weak transcription	Stomach Mucosa	stomach
2	chr11:75466200-75475800	Enhancers	Liver	Liver
3	chr11:75468600-75475400	Enhancers	HepG2	liver
4	chr11:75468800-75469800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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