Variant report

Variant	rs28802056
Chromosome Location	chr11:75465830-75465831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10160802	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10219339	0.80[AMR][1000 genomes]
rs10793124	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10793125	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10793126	0.87[EUR][1000 genomes]
rs10793127	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10793128	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10793129	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10793130	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10899109	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10899110	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10899112	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10899113	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899114	0.93[EUR][1000 genomes]
rs10899115	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10899116	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11236507	0.83[AMR][1000 genomes]
rs11236514	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11236515	0.88[EUR][1000 genomes]
rs11236516	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11236517	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11236518	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11236519	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11236520	0.85[AMR][1000 genomes]
rs11236525	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11236526	0.93[EUR][1000 genomes]
rs11236527	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11236528	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11821808	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1806895	0.93[EUR][1000 genomes]
rs2008476	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57188913	0.93[EUR][1000 genomes]
rs58411334	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59913369	0.93[EUR][1000 genomes]
rs72997616	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs28802056	DGAT2	cis	Whole Blood	GTEx
rs28802056	RP11-535A19.1	cis	Whole Blood	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75459600-75470200	Weak transcription	Stomach Mucosa	stomach

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