Variant report

Variant	rs11236534
Chromosome Location	chr11:75514528-75514529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:75514310-75514596	Kidney_OC	kidney:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
2	ZNF143	chr11:75514311-75514650	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr11:75514286-75514612	GM19239	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
4	RAD21	chr11:75514154-75514717	IMR90	lung:	n/a	chr11:75514462-75514474 chr11:75514277-75514287 chr11:75514458-75514472 chr11:75514457-75514476 chr11:75514163-75514175
5	BHLHE40	chr11:75514314-75514656	GM12878	blood:	n/a	n/a
6	RFX5	chr11:75514381-75514556	HepG2	liver:	n/a	n/a
7	CTCF	chr11:75513864-75514899	A549	lung:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
8	SMC3	chr11:75514243-75514674	Hela-S3	cervix:	n/a	chr11:75514458-75514472
9	CTCF	chr11:75514198-75514623	K562	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
10	CTCF	chr11:75514400-75514550	BE2_C	brain:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
11	RAD21	chr11:75514146-75514805	HepG2	liver:	n/a	chr11:75514462-75514474 chr11:75514277-75514287 chr11:75514458-75514472 chr11:75514457-75514476 chr11:75514163-75514175
12	CTCF	chr11:75514172-75514699	GM12878	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
13	RAD21	chr11:75514022-75514805	HCT-116	colon:	n/a	chr11:75514462-75514474 chr11:75514277-75514287 chr11:75514458-75514472 chr11:75514457-75514476 chr11:75514163-75514175
14	ZNF143	chr11:75514283-75514684	K562	blood:	n/a	n/a
15	CTCF	chr11:75514400-75514550	GM12801	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
16	CTCF	chr11:75514400-75514550	HepG2	liver:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
17	CTCF	chr11:75514400-75514550	RPTEC	kidney:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
18	CTCF	chr11:75514303-75514600	A549	lung:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
19	CTCF	chr11:75514302-75514620	Hela-S3	cervix:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
20	CTCF	chr11:75514380-75514530	HepG2	liver:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
21	CTCF	chr11:75514306-75514613	HUVEC	blood vessel:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
22	CTCF	chr11:75514400-75514550	GM06990	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
23	CTCF	chr11:75514380-75514530	HRPEpiC	eye:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
24	CTCF	chr11:75514331-75514591	ProgFib	skin:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
25	CTCF	chr11:75514420-75514570	Hela-S3	cervix:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
26	CTCF	chr11:75514400-75514550	HCT-116	colon:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
27	CTCF	chr11:75514380-75514530	BJ	skin:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
28	CTCF	chr11:75514380-75514530	GM12870	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
29	YY1	chr11:75514311-75514609	H1-hESC	embryonic stem cell:	n/a	chr11:75514473-75514485
30	CTCF	chr11:75514326-75514589	MCF-7	breast:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
31	GTF2F1	chr11:75514307-75514657	Hela-S3	cervix:	n/a	n/a
32	MAZ	chr11:75514315-75514624	K562	blood:	n/a	n/a
33	RAD21	chr11:75514244-75514713	HepG2	liver:	n/a	chr11:75514462-75514474 chr11:75514277-75514287 chr11:75514458-75514472 chr11:75514457-75514476
34	CTCF	chr11:75514400-75514550	GM12872	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
35	CTCF	chr11:75514380-75514530	GM12871	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
36	CTCF	chr11:75514400-75514550	HMEC	breast:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
37	CTCF	chr11:75514290-75514605	Pancreas_OC	pancreas:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
38	CTCF	chr11:75514380-75514530	NHEK	skin:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
39	MYC	chr11:75514423-75514614	MCF10A-Er-Src	breast:	n/a	n/a
40	CTCF	chr11:75514272-75514591	GM10266	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
41	CTCF	chr11:75514420-75514570	HCM	heart:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
42	CTCF	chr11:75514400-75514550	GM12865	blood:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
43	CHD2	chr11:75514413-75514636	GM12878	blood:	n/a	n/a
44	SMC3	chr11:75514246-75514790	GM12878	blood:	n/a	chr11:75514458-75514472
45	SMC3	chr11:75514211-75514645	K562	blood:	n/a	chr11:75514458-75514472
46	SP1	chr11:75514266-75514620	GM12878	blood:	n/a	n/a
47	CTCF	chr11:75514336-75514579	H1-hESC	embryonic stem cell:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
48	MTA3	chr11:75513872-75514738	GM12878	blood:	n/a	n/a
49	CTCF	chr11:75513954-75514921	SK-N-SH	brain:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472
50	CTCF	chr11:75514400-75514550	HCM	heart:	n/a	chr11:75514456-75514474 chr11:75514457-75514473 chr11:75514458-75514479 chr11:75514459-75514472

No.	Distal block	Cell Line	Cell type
1	chr11:75511055..75516378-chr11:75524946..75527964,8	MCF-7	breast:
2	chr11:75512671..75516260-chr11:75524397..75526274,3	MCF-7	breast:
3	chr11:75478711..75481665-chr11:75512333..75514833,3	MCF-7	breast:
4	chr11:75505538..75510533-chr11:75511527..75514992,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAP6-4	chr11:75514507-75514562	ENSG00000255507.1
2	lnc-MAP6-4	chr11:75514476-75514562	ENSG00000255507.1
3	lnc-MAP6-3	chr11:75514332-75514529	NONHSAT023131

Variant related genes	Relation type
ENSG00000254814	TF binding region
ENSG00000247867	Chromatin interaction
ENSG00000198382	Chromatin interaction
ENSG00000062282	Chromatin interaction
ENSG00000255507	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10160802	0.90[CEU][hapmap];0.81[CHB][hapmap]
rs1017713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793124	0.81[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs10793125	0.93[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs10793126	0.88[ASN][1000 genomes]
rs10793127	0.94[ASN][1000 genomes]
rs10793132	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793133	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793135	1.00[CEU][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899105	0.81[ASN][1000 genomes]
rs10899109	0.88[ASN][1000 genomes]
rs10899110	0.93[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs10899113	0.94[ASN][1000 genomes]
rs10899114	0.91[CEU][hapmap];0.81[CHB][hapmap]
rs10899116	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10899118	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10899119	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899120	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899124	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899127	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899128	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899129	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899131	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899132	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899133	0.97[ASN][1000 genomes]
rs10899134	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899135	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899136	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899137	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899138	0.90[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899139	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899140	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899141	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899142	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899144	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899145	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236507	0.80[ASN][1000 genomes]
rs11236508	0.81[ASN][1000 genomes]
rs11236509	0.81[ASN][1000 genomes]
rs11236511	0.93[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs11236514	0.81[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs11236515	0.81[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs11236516	0.81[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs11236517	0.93[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs11236518	0.81[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs11236519	0.94[ASN][1000 genomes]
rs11236527	0.94[ASN][1000 genomes]
rs11236528	0.94[ASN][1000 genomes]
rs11236530	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236533	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236537	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236538	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236539	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236540	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236542	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236543	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236545	0.90[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236546	0.90[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236549	0.88[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236551	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236552	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236553	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236554	0.91[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11236555	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236564	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11501918	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11821808	0.88[ASN][1000 genomes]
rs11822903	0.90[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11823869	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223234	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12224062	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278224	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278257	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280456	0.91[CEU][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs12280464	0.90[CEU][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes]
rs12285853	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1458836	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17134394	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2004638	0.91[CEU][hapmap]
rs2008476	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs2168947	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3060	1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3740849	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740850	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs531117	0.81[CHB][hapmap]
rs58340821	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58411334	0.94[ASN][1000 genomes]
rs60677263	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60692776	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs643884	0.81[CHB][hapmap]
rs644361	0.81[CHB][hapmap]
rs6592615	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66784596	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67233017	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67268976	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7101806	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7106736	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107742	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7108178	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110517	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118039	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7118293	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7118569	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7122123	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126727	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7128716	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72995678	0.81[ASN][1000 genomes]
rs72997616	0.94[ASN][1000 genomes]
rs72997623	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72997677	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7933235	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7937642	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7944950	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947418	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7947512	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75496200-75514800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:75506400-75514600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:75509000-75525200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:75509200-75515600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:75509800-75525000	Weak transcription	Fetal Stomach	stomach
6	chr11:75511000-75514800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:75511600-75515000	Enhancers	Brain Substantia Nigra	brain
8	chr11:75511800-75514800	Enhancers	Brain Anterior Caudate	brain
9	chr11:75511800-75514800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr11:75512000-75518600	Weak transcription	Stomach Mucosa	stomach
11	chr11:75512200-75514800	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:75512200-75521800	Weak transcription	Lung	lung
13	chr11:75512800-75523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:75512800-75525000	Weak transcription	Esophagus	oesophagus
15	chr11:75513000-75517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:75513000-75521400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:75513000-75525200	Weak transcription	Fetal Intestine Large	intestine
18	chr11:75513200-75514800	Enhancers	Brain Hippocampus Middle	brain
19	chr11:75513200-75519600	Weak transcription	GM12878-XiMat	blood
20	chr11:75513400-75524600	Weak transcription	Primary T cells from cord blood	blood
21	chr11:75513400-75525000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:75513600-75514800	Enhancers	HepG2	liver
23	chr11:75513800-75525000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:75514200-75514600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:75514200-75514800	Enhancers	Primary B cells from peripheral blood	blood
26	chr11:75514200-75514800	Enhancers	Brain Angular Gyrus	brain
27	chr11:75514400-75514600	Enhancers	Right Ventricle	heart
28	chr11:75514400-75514800	Enhancers	Rectal Smooth Muscle	rectum
29	chr11:75514400-75519800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr11:75514400-75520200	Weak transcription	Adipose Nuclei	Adipose
31	chr11:75514400-75524600	Weak transcription	Fetal Intestine Small	intestine

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