Variant report

Variant	rs11236555
Chromosome Location	chr11:75551090-75551091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:75550982-75551244	IMR90	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75523255..75528239-chr11:75549898..75558151,19	MCF-7	breast:
2	chr11:75550908..75553592-chr11:75563890..75565902,2	K562	blood:
3	chr11:75544881..75547787-chr11:75550655..75553101,3	MCF-7	breast:
4	chr11:75542621..75546363-chr11:75550755..75554633,4	MCF-7	breast:
5	chr11:75522755..75529746-chr11:75549090..75554652,13	MCF-7	breast:
6	chr11:75273481..75275282-chr11:75550738..75553469,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000199362	TF binding region
ENSG00000200256	TF binding region
ENSG00000255507	Chromatin interaction
ENSG00000200256	Chromatin interaction
ENSG00000149257	Chromatin interaction
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10160802	0.90[CEU][hapmap]
rs1017713	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10219339	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793124	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs10793125	0.81[JPT][hapmap]
rs10793127	0.81[ASN][1000 genomes]
rs10793132	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793133	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793135	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899110	0.80[JPT][hapmap]
rs10899113	0.81[ASN][1000 genomes]
rs10899114	0.91[CEU][hapmap]
rs10899116	0.90[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs10899118	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs10899119	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899120	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899121	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899122	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899123	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899124	0.91[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899127	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899128	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899129	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899131	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899132	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899133	0.90[ASN][1000 genomes]
rs10899134	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899135	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899136	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899137	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899138	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899139	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899140	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899141	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899142	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899144	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899145	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236511	0.81[JPT][hapmap]
rs11236514	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs11236515	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs11236516	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs11236518	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs11236519	0.81[ASN][1000 genomes]
rs11236527	0.81[ASN][1000 genomes]
rs11236528	0.81[ASN][1000 genomes]
rs11236530	0.89[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236531	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11236533	1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236534	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236537	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236538	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236539	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236540	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236542	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236543	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236545	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236546	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11236549	0.88[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236551	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236552	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236553	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236554	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236564	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11236565	0.85[ASN][1000 genomes]
rs11501918	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11822903	0.90[CEU][hapmap];0.92[CHB][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11823869	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12222542	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12222995	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12223234	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12224062	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12278224	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12278257	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12280456	0.91[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12280464	0.90[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12285853	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1458836	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17134394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2004638	0.91[CEU][hapmap]
rs2008476	0.90[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs2168947	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3060	1.00[CEU][hapmap];0.83[YRI][hapmap];0.92[EUR][1000 genomes]
rs3740849	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3740850	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58340821	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58411334	0.81[ASN][1000 genomes]
rs60677263	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60692776	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6592615	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66784596	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67233017	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67268976	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101806	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7106736	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7107742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7108178	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7110517	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7118039	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118293	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7118569	0.92[EUR][1000 genomes]
rs7122123	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126727	0.82[CEU][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7128716	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72997616	0.81[ASN][1000 genomes]
rs72997623	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72997677	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933235	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7937642	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7944950	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7947418	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947512	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75528200-75553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:75528400-75561600	Weak transcription	HSMM	muscle
3	chr11:75528400-75561800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:75528600-75561400	Weak transcription	Fetal Brain Female	brain
5	chr11:75528600-75561400	Weak transcription	Thymus	Thymus
6	chr11:75528600-75563600	Weak transcription	Dnd41	blood
7	chr11:75535400-75560800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:75535400-75579000	Weak transcription	Fetal Intestine Large	intestine
9	chr11:75535600-75556200	Weak transcription	A549	lung
10	chr11:75535800-75573800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr11:75538000-75551400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:75538000-75563000	Weak transcription	HepG2	liver
13	chr11:75538200-75551400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:75538600-75567600	Weak transcription	Placenta	Placenta
15	chr11:75538800-75591400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:75540200-75561000	Weak transcription	Lung	lung
17	chr11:75542800-75561800	Weak transcription	Fetal Thymus	thymus
18	chr11:75543600-75551400	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:75543600-75551400	Weak transcription	Right Atrium	heart
20	chr11:75543600-75551600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:75543800-75551200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:75543800-75551200	Weak transcription	Left Ventricle	heart
23	chr11:75543800-75551400	Weak transcription	Psoas Muscle	Psoas
24	chr11:75543800-75551400	Weak transcription	Right Ventricle	heart
25	chr11:75543800-75552200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:75543800-75561200	Weak transcription	Spleen	Spleen
27	chr11:75543800-75561400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:75544000-75584000	Weak transcription	Small Intestine	intestine
29	chr11:75544600-75554000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:75546400-75551400	Weak transcription	Hela-S3	cervix
31	chr11:75547400-75566400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:75547600-75600000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:75547800-75551400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:75547800-75551400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:75547800-75561000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:75547800-75561000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:75547800-75563400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr11:75548000-75553000	Weak transcription	Stomach Mucosa	stomach
39	chr11:75548000-75562600	Weak transcription	Primary T cells from cord blood	blood
40	chr11:75548200-75561000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr11:75548800-75551400	Weak transcription	Brain Substantia Nigra	brain
42	chr11:75549000-75555000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr11:75549800-75553200	Enhancers	Fetal Lung	lung
44	chr11:75549800-75561800	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:75549800-75602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:75550000-75551400	Weak transcription	HUVEC	blood vessel
47	chr11:75550000-75552400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr11:75550000-75561200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr11:75550000-75561200	Weak transcription	K562	blood
50	chr11:75550200-75551200	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links