Variant report

Variant	rs10793135
Chromosome Location	chr11:75561659-75561660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75547332..75548952-chr11:75561317..75563395,2	MCF-7	breast:
2	chr11:75538908..75540787-chr11:75559807..75562347,2	MCF-7	breast:
3	chr11:75521249..75523671-chr11:75559496..75562392,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255507	Chromatin interaction
ENSG00000199362	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10160802	0.90[CEU][hapmap]
rs1017713	1.00[CEU][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10219339	1.00[CEU][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793124	0.81[CEU][hapmap]
rs10793125	0.81[CEU][hapmap]
rs10793132	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793133	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899110	0.81[CEU][hapmap]
rs10899114	0.90[CEU][hapmap]
rs10899116	0.90[CEU][hapmap];0.89[CHD][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap]
rs10899118	1.00[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs10899119	1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899120	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899121	1.00[CEU][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899122	1.00[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899123	1.00[CEU][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899124	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899127	1.00[CEU][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899128	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899129	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899131	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899132	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899133	0.87[ASN][1000 genomes]
rs10899134	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899135	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899136	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899137	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899138	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899139	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899140	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899141	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899142	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899144	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899145	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236514	0.81[CEU][hapmap]
rs11236515	0.81[CEU][hapmap]
rs11236516	0.81[CEU][hapmap]
rs11236518	0.81[CEU][hapmap]
rs11236530	1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236531	1.00[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11236533	1.00[CEU][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236534	1.00[CEU][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236537	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11236538	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236539	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236540	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236542	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236543	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236545	1.00[CEU][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236546	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236549	1.00[CEU][hapmap];0.83[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236551	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236552	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236553	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236554	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11236555	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236564	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236565	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11501918	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11822903	0.88[CEU][hapmap];0.83[CHB][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11823869	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12222542	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12222995	1.00[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12223234	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12224062	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12278224	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12278257	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12280456	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12280464	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12285853	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1458836	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17134394	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2004638	0.90[CEU][hapmap]
rs2008476	0.90[CEU][hapmap]
rs2168947	1.00[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs3060	1.00[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs3740849	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3740850	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58340821	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60677263	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60692776	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6592615	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66784596	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67233017	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67268976	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101806	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7106736	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7107742	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7108178	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7110517	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7118039	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7118293	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7118569	0.92[EUR][1000 genomes]
rs7122123	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7126727	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7128716	0.88[CEU][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72997623	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72997677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7933235	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7937642	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7944950	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7947418	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7947512	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv832212	chr11:75524993-75725623	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10793135	RP11-535A19.1	cis	Whole Blood	GTEx
rs10793135	DGAT2	cis	Whole Blood	GTEx

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75528400-75561800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:75528600-75563600	Weak transcription	Dnd41	blood
3	chr11:75535400-75579000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:75535800-75573800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr11:75538000-75563000	Weak transcription	HepG2	liver
6	chr11:75538600-75567600	Weak transcription	Placenta	Placenta
7	chr11:75538800-75591400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:75542800-75561800	Weak transcription	Fetal Thymus	thymus
9	chr11:75544000-75584000	Weak transcription	Small Intestine	intestine
10	chr11:75547400-75566400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:75547600-75600000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:75547800-75563400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:75548000-75562600	Weak transcription	Primary T cells from cord blood	blood
14	chr11:75549800-75561800	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:75549800-75602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:75550200-75564000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:75550200-75564000	Weak transcription	Fetal Intestine Small	intestine
18	chr11:75550200-75564000	Weak transcription	Fetal Stomach	stomach
19	chr11:75551000-75562000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:75551600-75563400	Weak transcription	NHEK	skin
21	chr11:75551800-75564600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:75551800-75569000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:75552000-75561800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:75552000-75580000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:75553200-75561800	Weak transcription	Fetal Lung	lung
26	chr11:75553200-75561800	Weak transcription	Stomach Mucosa	stomach
27	chr11:75553200-75564400	Weak transcription	Gastric	stomach
28	chr11:75553800-75600800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:75554800-75562400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr11:75557400-75562400	Weak transcription	Esophagus	oesophagus
31	chr11:75557400-75586800	Weak transcription	Ovary	ovary
32	chr11:75558400-75602800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr11:75559800-75566200	Weak transcription	Hela-S3	cervix
34	chr11:75559800-75575600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:75560200-75579400	Weak transcription	Pancreas	Pancrea
36	chr11:75560800-75561800	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:75560800-75562000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:75560800-75562400	Enhancers	Primary B cells from peripheral blood	blood
39	chr11:75560800-75562800	Enhancers	Adipose Nuclei	Adipose
40	chr11:75560800-75563000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr11:75561000-75561800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:75561000-75562000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr11:75561000-75562000	Enhancers	Right Ventricle	heart
44	chr11:75561000-75562600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr11:75561000-75562800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:75561000-75562800	Enhancers	Fetal Heart	heart
47	chr11:75561000-75563200	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr11:75561200-75561800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:75561200-75562000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:75561200-75562000	Flanking Active TSS	GM12878-XiMat	blood

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