Variant report

Variant	rs10899129
Chromosome Location	chr11:75523900-75523901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:75523515-75528309	GM12892	blood:	n/a	n/a
2	POLR2A	chr11:75523608-75524552	GM12892	blood:	n/a	n/a
3	SMC3	chr11:75523672-75523962	HepG2	liver:	n/a	n/a
4	FOXA1	chr11:75523363-75524065	HepG2	liver:	n/a	n/a
5	POLR2A	chr11:75523616-75524075	HepG2	liver:	n/a	n/a
6	HEY1	chr11:75523611-75524014	HepG2	liver:	n/a	n/a
7	POLR2A	chr11:75523529-75524891	GM12892	blood:	n/a	n/a
8	ARID3A	chr11:75523556-75524091	HepG2	liver:	n/a	n/a
9	HNF4G	chr11:75523570-75523924	HepG2	liver:	n/a	n/a
10	FOS	chr11:75523761-75525026	MCF10A-Er-Src	breast:	n/a	chr11:75524807-75524815 chr11:75524808-75524819 chr11:75524810-75524817 chr11:75524306-75524318 chr11:75524807-75524814 chr11:75524805-75524816 chr11:75524806-75524815 chr11:75524805-75524817
11	FOXA1	chr11:75523502-75523941	HepG2	liver:	n/a	n/a
12	MYBL2	chr11:75523471-75524101	HepG2	liver:	n/a	n/a
13	POLR2A	chr11:75523875-75524645	GM12878	blood:	n/a	n/a
14	SP1	chr11:75523448-75524039	HepG2	liver:	n/a	n/a
15	POLR2A	chr11:75523862-75528580	GM12891	blood:	n/a	n/a
16	TBP	chr11:75523638-75523902	HepG2	liver:	n/a	n/a
17	TEAD4	chr11:75523465-75524048	HepG2	liver:	n/a	n/a
18	FOXA2	chr11:75523273-75524140	HepG2	liver:	n/a	n/a
19	TEAD4	chr11:75523600-75524039	H1-hESC	embryonic stem cell:	n/a	n/a
20	STAT3	chr11:75523762-75523930	MCF10A-Er-Src	breast:	n/a	n/a
21	FOXA2	chr11:75523524-75523939	HepG2	liver:	n/a	n/a
22	TEAD4	chr11:75523663-75524026	H1-hESC	embryonic stem cell:	n/a	n/a
23	REST	chr11:75523592-75523988	HepG2	liver:	n/a	n/a
24	EP300	chr11:75523589-75523983	HepG2	liver:	n/a	n/a
25	RELA	chr11:75523760-75524609	GM18505	blood:	n/a	chr11:75524301-75524310 chr11:75524301-75524310
26	FOXA1	chr11:75523467-75524009	HepG2	liver:	n/a	n/a
27	POLR2A	chr11:75523509-75524204	H1-hESC	embryonic stem cell:	n/a	n/a
28	FOXA1	chr11:75523420-75524072	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:75523255..75528239-chr11:75549898..75558151,19	MCF-7	breast:
2	chr11:75507903..75509753-chr11:75522846..75525543,2	MCF-7	breast:
3	chr11:75274903..75276889-chr11:75523862..75525400,2	MCF-7	breast:
4	chr11:75111521..75113837-chr11:75523467..75525934,2	K562	blood:
5	chr11:75522755..75529746-chr11:75549090..75554652,13	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAP6-3	chr11:75523525-75524906	NONHSAT023136

Variant related genes	Relation type
ENSG00000255507	TF binding region
UVRAG	TF binding region
ENSG00000149273	Chromatin interaction
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10160802	0.90[CEU][hapmap]
rs1017713	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10219339	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793124	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs10793125	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs10793126	0.86[ASN][1000 genomes]
rs10793127	0.92[ASN][1000 genomes]
rs10793132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10793135	1.00[CEU][hapmap];0.85[CHB][hapmap];0.96[CHD][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899109	0.86[ASN][1000 genomes]
rs10899110	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10899113	0.92[ASN][1000 genomes]
rs10899114	0.90[CEU][hapmap]
rs10899116	0.90[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs10899118	1.00[CEU][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes]
rs10899119	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899120	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899121	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899122	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899123	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899124	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899127	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899132	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899133	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10899134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899135	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899137	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899138	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899139	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899140	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899141	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899142	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899144	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899145	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236511	0.86[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs11236514	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11236515	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11236516	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11236517	0.86[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs11236518	0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11236519	0.92[ASN][1000 genomes]
rs11236527	0.92[ASN][1000 genomes]
rs11236528	0.92[ASN][1000 genomes]
rs11236530	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236531	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11236533	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236534	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236537	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236538	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236539	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236542	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236543	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236545	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236549	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236551	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236552	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11236555	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11236564	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11501918	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11821808	0.86[ASN][1000 genomes]
rs11822903	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11823869	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222542	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222995	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12223234	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12224062	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12278224	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12278257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12280456	0.90[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12280464	0.90[CEU][hapmap];0.85[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs12285853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1458836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134394	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2004638	0.90[CEU][hapmap]
rs2008476	0.90[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs2168947	1.00[CEU][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs3060	1.00[CEU][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs3740849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740850	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58340821	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58411334	0.92[ASN][1000 genomes]
rs60677263	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60692776	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66784596	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67233017	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67268976	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7101806	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7106736	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7107742	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7108178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110517	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7118039	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7118293	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7118569	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7122123	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7126727	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7128716	0.88[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72997616	0.92[ASN][1000 genomes]
rs72997623	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72997677	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7933235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7937642	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7944950	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7947418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7947512	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10899129	RP11-535A19.1	cis	Whole Blood	GTEx
rs10899129	DGAT2	cis	Whole Blood	GTEx

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75509000-75525200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:75509800-75525000	Weak transcription	Fetal Stomach	stomach
3	chr11:75512800-75525000	Weak transcription	Esophagus	oesophagus
4	chr11:75513000-75525200	Weak transcription	Fetal Intestine Large	intestine
5	chr11:75513400-75524600	Weak transcription	Primary T cells from cord blood	blood
6	chr11:75513400-75525000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:75513800-75525000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:75514400-75524600	Weak transcription	Fetal Intestine Small	intestine
9	chr11:75520200-75524400	Enhancers	Adipose Nuclei	Adipose
10	chr11:75520600-75525000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:75520600-75525000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:75521400-75525400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:75521800-75524800	Weak transcription	Primary B cells from cord blood	blood
14	chr11:75522000-75525200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr11:75522200-75525000	Weak transcription	Lung	lung
16	chr11:75522400-75524400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:75522400-75524800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:75522400-75525400	Weak transcription	Spleen	Spleen
19	chr11:75522600-75524000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr11:75522800-75524000	Weak transcription	K562	blood
21	chr11:75522800-75525000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:75522800-75525200	Weak transcription	Liver	Liver
23	chr11:75523000-75524600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:75523000-75524800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:75523200-75524600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:75523400-75525600	Flanking Active TSS	GM12878-XiMat	blood
27	chr11:75523600-75524000	Flanking Active TSS	Hela-S3	cervix
28	chr11:75523600-75524200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:75523600-75524200	Enhancers	HUVEC	blood vessel
30	chr11:75523600-75524400	Enhancers	Fetal Thymus	thymus
31	chr11:75523600-75525000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:75523600-75525000	Enhancers	NHEK	skin
33	chr11:75523600-75525200	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:75523600-75525200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr11:75523600-75525200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr11:75523600-75525200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr11:75523600-75525200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:75523600-75525400	Flanking Active TSS	HepG2	liver
39	chr11:75523800-75524000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:75523800-75524000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr11:75523800-75524600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:75523800-75524800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:75523800-75525000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:75523800-75525000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:75523800-75525000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:75523800-75525200	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr11:75523800-75525200	Enhancers	Placenta	Placenta
48	chr11:75523800-75525400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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