Variant report

Variant	rs10899105
Chromosome Location	chr11:75447117-75447118
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75444653..75447401-chr11:75455301..75457066,2	MCF-7	breast:
2	chr11:75445518..75448042-chr11:75450594..75453068,2	MCF-7	breast:
3	chr11:75446630..75448572-chr11:75453291..75455245,2	K562	blood:
4	chr11:75442509..75444846-chr11:75445963..75448004,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10160784	0.81[ASN][1000 genomes]
rs1017713	0.81[ASN][1000 genomes]
rs10219339	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10793124	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10793125	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10793126	0.93[ASN][1000 genomes]
rs10793127	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10793128	0.84[AMR][1000 genomes]
rs10899109	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10899110	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10899113	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10899116	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10899119	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10899120	0.81[ASN][1000 genomes]
rs10899121	0.80[ASN][1000 genomes]
rs10899122	0.80[ASN][1000 genomes]
rs10899123	0.81[ASN][1000 genomes]
rs10899124	0.80[ASN][1000 genomes]
rs10899127	0.80[ASN][1000 genomes]
rs10899128	0.80[ASN][1000 genomes]
rs11236507	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236511	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236514	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11236515	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11236516	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11236517	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11236518	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11236519	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11236525	0.82[AMR][1000 genomes]
rs11236527	0.85[ASN][1000 genomes]
rs11236528	0.85[ASN][1000 genomes]
rs11236530	0.81[ASN][1000 genomes]
rs11236531	0.80[ASN][1000 genomes]
rs11236533	0.81[ASN][1000 genomes]
rs11236534	0.81[ASN][1000 genomes]
rs11501918	0.80[ASN][1000 genomes]
rs11821808	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11823869	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12222542	0.81[ASN][1000 genomes]
rs12222995	0.81[ASN][1000 genomes]
rs2008476	0.85[ASN][1000 genomes]
rs36016715	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs499974	0.81[ASN][1000 genomes]
rs531117	0.81[ASN][1000 genomes]
rs559355	0.81[ASN][1000 genomes]
rs58340821	0.81[ASN][1000 genomes]
rs58411334	0.85[ASN][1000 genomes]
rs600518	0.81[ASN][1000 genomes]
rs600626	0.81[ASN][1000 genomes]
rs60677263	0.81[ASN][1000 genomes]
rs643884	0.81[ASN][1000 genomes]
rs644361	0.81[ASN][1000 genomes]
rs7118293	0.80[ASN][1000 genomes]
rs7126727	0.80[ASN][1000 genomes]
rs72995678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72997616	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7944950	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7947512	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10899105	RP11-535A19.1	cis	Whole Blood	GTEx
rs10899105	DGAT2	cis	Whole Blood	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75443200-75448800	Enhancers	Fetal Intestine Large	intestine
2	chr11:75444400-75447200	Enhancers	Fetal Heart	heart
3	chr11:75444600-75447400	Enhancers	Fetal Intestine Small	intestine
4	chr11:75445000-75447400	Enhancers	Fetal Thymus	thymus
5	chr11:75445200-75455000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:75446000-75454200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:75446000-75454800	Weak transcription	Psoas Muscle	Psoas
8	chr11:75446200-75447200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr11:75446800-75448000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:75446800-75448000	Weak transcription	Liver	Liver
11	chr11:75446800-75454800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:75447000-75448200	Weak transcription	Adipose Nuclei	Adipose
13	chr11:75447000-75448200	Weak transcription	HepG2	liver
14	chr11:75447000-75451000	Weak transcription	Stomach Mucosa	stomach

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