Variant report

Variant	rs10160784
Chromosome Location	chr11:75456055-75456056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75391337..75392876-chr11:75455542..75458456,2	MCF-7	breast:
2	chr11:75452335..75453866-chr11:75455787..75458681,2	MCF-7	breast:
3	chr11:75444653..75447401-chr11:75455301..75457066,2	MCF-7	breast:
4	chr11:75455929..75459319-chr11:75467607..75470163,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263993	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10793124	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs10793125	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs10793126	0.88[ASN][1000 genomes]
rs10793127	0.80[ASN][1000 genomes]
rs10899105	0.81[ASN][1000 genomes]
rs10899109	0.88[ASN][1000 genomes]
rs10899110	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs10899113	0.80[ASN][1000 genomes]
rs11236507	0.80[ASN][1000 genomes]
rs11236508	0.81[ASN][1000 genomes]
rs11236509	0.81[ASN][1000 genomes]
rs11236511	0.81[CHB][hapmap];0.82[ASN][1000 genomes]
rs11236514	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs11236515	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs11236516	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs11236517	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs11236518	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs11236519	0.80[ASN][1000 genomes]
rs11236527	0.80[ASN][1000 genomes]
rs11236528	0.80[ASN][1000 genomes]
rs11821808	0.88[ASN][1000 genomes]
rs1219549	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1219550	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2008476	0.80[ASN][1000 genomes]
rs36016715	0.80[ASN][1000 genomes]
rs498936	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs499974	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs531117	0.93[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559355	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58411334	0.80[ASN][1000 genomes]
rs600518	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600626	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643884	0.94[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644361	0.93[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656095	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs673335	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs695110	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72995678	0.81[ASN][1000 genomes]
rs72997616	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75453800-75456200	Enhancers	Fetal Intestine Large	intestine
2	chr11:75453800-75458000	Enhancers	Fetal Heart	heart
3	chr11:75454000-75456400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:75454000-75456800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:75454000-75457000	Enhancers	Left Ventricle	heart
6	chr11:75454600-75456400	Enhancers	Adipose Nuclei	Adipose
7	chr11:75454800-75457400	Enhancers	Right Atrium	heart
8	chr11:75454800-75458200	Enhancers	Right Ventricle	heart
9	chr11:75455200-75457800	Weak transcription	Stomach Mucosa	stomach
10	chr11:75455600-75456800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:75455600-75457000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:75455600-75458400	Enhancers	HepG2	liver
13	chr11:75455600-75459400	Weak transcription	K562	blood
14	chr11:75456000-75457000	Weak transcription	Liver	Liver

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