Variant report

Variant	rs673335
Chromosome Location	chr11:75450576-75450577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10160784	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1219549	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1219550	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs498936	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs499974	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs531117	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs559355	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs600518	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs600626	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs643884	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs644361	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs656095	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs695110	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75445200-75455000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:75446000-75454200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:75446000-75454800	Weak transcription	Psoas Muscle	Psoas
4	chr11:75446800-75454800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:75447000-75451000	Weak transcription	Stomach Mucosa	stomach
6	chr11:75448000-75451600	Enhancers	Liver	Liver
7	chr11:75448600-75453200	Weak transcription	Fetal Intestine Small	intestine
8	chr11:75448800-75453800	Weak transcription	Fetal Intestine Large	intestine
9	chr11:75450400-75453800	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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