Variant report

Variant	rs498936
Chromosome Location	chr11:75454878-75454879
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75447941..75450758-chr11:75453303..75455512,2	MCF-7	breast:
2	chr11:75446630..75448572-chr11:75453291..75455245,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10160784	0.90[CEU][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10160802	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs10899112	0.81[ASN][1000 genomes]
rs10899114	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs10899115	0.81[ASN][1000 genomes]
rs10899118	0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11236525	0.81[ASN][1000 genomes]
rs1219549	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1219550	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168947	0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3060	0.93[CHB][hapmap]
rs499974	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs531117	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs559355	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs575976	0.86[CHB][hapmap]
rs59913369	0.81[ASN][1000 genomes]
rs600518	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs600626	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs643884	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs644361	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs656095	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs673335	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs695110	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75445200-75455000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:75452800-75456000	Enhancers	Liver	Liver
3	chr11:75453200-75455200	Enhancers	Stomach Mucosa	stomach
4	chr11:75453200-75455600	Enhancers	Fetal Intestine Small	intestine
5	chr11:75453600-75455200	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:75453800-75455600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr11:75453800-75456200	Enhancers	Fetal Intestine Large	intestine
8	chr11:75453800-75458000	Enhancers	Fetal Heart	heart
9	chr11:75454000-75455600	Enhancers	K562	blood
10	chr11:75454000-75456400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:75454000-75456800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr11:75454000-75457000	Enhancers	Left Ventricle	heart
13	chr11:75454200-75455400	Enhancers	Fetal Muscle Leg	muscle
14	chr11:75454200-75455600	Enhancers	Fetal Muscle Trunk	muscle
15	chr11:75454600-75456400	Enhancers	Adipose Nuclei	Adipose
16	chr11:75454800-75455000	Bivalent Enhancer	Small Intestine	intestine
17	chr11:75454800-75455200	Enhancers	Psoas Muscle	Psoas
18	chr11:75454800-75455200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr11:75454800-75455400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:75454800-75455400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:75454800-75455400	Bivalent Enhancer	Fetal Stomach	stomach
22	chr11:75454800-75455400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:75454800-75455400	Enhancers	Spleen	Spleen
24	chr11:75454800-75455600	Flanking Active TSS	HepG2	liver
25	chr11:75454800-75455800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:75454800-75456000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:75454800-75456000	Enhancers	Fetal Thymus	thymus
28	chr11:75454800-75457400	Enhancers	Right Atrium	heart
29	chr11:75454800-75458200	Enhancers	Right Ventricle	heart

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