Variant report

Variant	rs36016715
Chromosome Location	chr11:75449644-75449645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75447941..75450758-chr11:75453303..75455512,2	MCF-7	breast:
2	chr11:75444770..75447014-chr11:75448691..75450973,4	K562	blood:
3	chr11:75439999..75442226-chr11:75447121..75449864,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10160784	0.80[ASN][1000 genomes]
rs10160802	0.83[AMR][1000 genomes]
rs10793124	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10793125	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10793126	0.92[ASN][1000 genomes]
rs10793127	0.83[ASN][1000 genomes]
rs10899105	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899109	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10899110	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10899112	0.83[AMR][1000 genomes]
rs10899113	0.83[ASN][1000 genomes]
rs10899116	0.82[ASN][1000 genomes]
rs11236507	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11236508	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236509	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11236511	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11236514	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11236515	0.92[ASN][1000 genomes]
rs11236516	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11236517	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11236518	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11236519	0.83[ASN][1000 genomes]
rs11236527	0.83[ASN][1000 genomes]
rs11236528	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11821808	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2008476	0.83[ASN][1000 genomes]
rs499974	0.80[ASN][1000 genomes]
rs531117	0.80[ASN][1000 genomes]
rs559355	0.80[ASN][1000 genomes]
rs58411334	0.83[ASN][1000 genomes]
rs600518	0.80[ASN][1000 genomes]
rs600626	0.80[ASN][1000 genomes]
rs643884	0.80[ASN][1000 genomes]
rs644361	0.80[ASN][1000 genomes]
rs72995678	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72997616	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs36016715	RP11-535A19.1	cis	Whole Blood	GTEx
rs36016715	DGAT2	cis	Whole Blood	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75445200-75455000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:75446000-75454200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:75446000-75454800	Weak transcription	Psoas Muscle	Psoas
4	chr11:75446800-75454800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:75447000-75451000	Weak transcription	Stomach Mucosa	stomach
6	chr11:75448000-75451600	Enhancers	Liver	Liver
7	chr11:75448600-75449800	Weak transcription	HepG2	liver
8	chr11:75448600-75453200	Weak transcription	Fetal Intestine Small	intestine
9	chr11:75448800-75453800	Weak transcription	Fetal Intestine Large	intestine

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