Variant report

Variant	rs11236767
Chromosome Location	chr11:76211421-76211422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76210981..76212652-chr11:76215333..76217549,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11236766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11532107	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17134961	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1939469	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2155221	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3758715	0.83[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3758716	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4426156	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57790584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58003764	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59382353	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61696910	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61894509	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61894530	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61894532	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61894534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61894541	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73004436	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7940373	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11236767	RP11-111M22.2	cis	Thyroid	GTEx
rs11236767	KCTD21	cis	cerebellum	SCAN
rs11236767	KCTD21	cis	parietal	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76184400-76235000	Weak transcription	NHEK	skin
5	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
8	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
9	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
10	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial
13	chr11:76192800-76221200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:76192800-76242800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:76201400-76212800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr11:76204000-76221200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:76205200-76211600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:76205200-76213000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:76205200-76234200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:76205200-76235800	Weak transcription	NHLF	lung
21	chr11:76205200-76254400	Weak transcription	Aorta	Aorta
22	chr11:76205400-76211800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:76205400-76221200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:76205400-76227000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:76205400-76235800	Weak transcription	Lung	lung
26	chr11:76205400-76240000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:76205400-76254600	Weak transcription	Right Ventricle	heart
28	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:76205600-76211600	Weak transcription	HSMMtube	muscle
30	chr11:76205600-76221200	Weak transcription	Pancreas	Pancrea
31	chr11:76205600-76239200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:76205800-76221200	Weak transcription	Ovary	ovary
33	chr11:76205800-76235800	Weak transcription	Esophagus	oesophagus
34	chr11:76206000-76249200	Weak transcription	Colonic Mucosa	Colon
35	chr11:76206200-76212000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr11:76206400-76212000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:76206800-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:76207200-76212000	Strong transcription	Fetal Intestine Large	intestine
39	chr11:76207400-76221400	Weak transcription	Gastric	stomach
40	chr11:76207400-76239400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:76207400-76240000	Weak transcription	Brain Substantia Nigra	brain
42	chr11:76207400-76254400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:76207600-76219200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:76207600-76239400	Weak transcription	Brain Angular Gyrus	brain
45	chr11:76207800-76221400	Weak transcription	Osteobl	bone
46	chr11:76208000-76211600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:76208000-76234200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr11:76208000-76234200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:76208000-76235200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:76208200-76211600	Weak transcription	Primary T cells from cord blood	blood

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