Variant report

Variant	rs4426156
Chromosome Location	chr11:76149594-76149595
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11236766	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236767	0.82[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11532107	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17134961	1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs1939469	1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2155221	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3758715	1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3758716	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57790584	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58003764	0.88[EUR][1000 genomes]
rs59382353	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61696910	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61894509	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61894530	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61894532	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61894534	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61894541	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73004436	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7940373	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3486155	chr11:76141104-76149702	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760197	chr11:76143019-76153868	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4426156	RP11-111M22.2	cis	Thyroid	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76144000-76154000	Weak transcription	Left Ventricle	heart
2	chr11:76145600-76153600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:76146000-76152400	Weak transcription	Fetal Intestine Small	intestine
4	chr11:76147600-76150800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:76147600-76154400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:76148000-76154400	Weak transcription	HSMM	muscle
7	chr11:76148200-76154600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:76148600-76151000	Weak transcription	K562	blood
9	chr11:76148600-76152800	Weak transcription	Fetal Heart	heart
10	chr11:76148600-76154000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:76148600-76154200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:76148600-76154400	Weak transcription	Right Ventricle	heart
13	chr11:76149200-76150800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:76149200-76154400	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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