Variant report

Variant	rs61894530
Chromosome Location	chr11:76192036-76192037
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76191502..76194293-chr11:76198687..76201522,2	MCF-7	breast:
2	chr11:76190688..76192947-chr11:76198433..76201383,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11236766	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236767	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11532107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134961	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1939469	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2155221	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3758715	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3758716	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4426156	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57790584	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58003764	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59382353	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61696910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61894509	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61894532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61894534	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61894541	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73004436	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7940373	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61894530	RP11-111M22.2	cis	Thyroid	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76177400-76195400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:76180200-76204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:76182800-76192400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:76183800-76194400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:76184400-76235000	Weak transcription	NHEK	skin
9	chr11:76184800-76202600	Weak transcription	Aorta	Aorta
10	chr11:76185000-76204000	Weak transcription	Right Ventricle	heart
11	chr11:76185400-76193400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:76187000-76192400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:76188400-76193000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:76189000-76192200	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:76189000-76192400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:76189000-76192800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:76189400-76192200	Strong transcription	Fetal Stomach	stomach
20	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
21	chr11:76189600-76193200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:76190000-76192400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:76190000-76192600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:76190000-76192800	Strong transcription	Fetal Lung	lung
25	chr11:76190000-76193800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:76190200-76192200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:76190200-76192400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:76190200-76192400	Strong transcription	Fetal Muscle Leg	muscle
29	chr11:76190200-76192400	Strong transcription	Thymus	Thymus
30	chr11:76190200-76192600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:76190200-76192600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:76190200-76192600	Strong transcription	Adipose Nuclei	Adipose
33	chr11:76190200-76192600	Strong transcription	Liver	Liver
34	chr11:76190200-76192600	Strong transcription	Brain Anterior Caudate	brain
35	chr11:76190200-76192600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr11:76190200-76192600	Strong transcription	Ovary	ovary
37	chr11:76190200-76192800	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr11:76190200-76192800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:76190200-76192800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:76190200-76192800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:76190200-76192800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr11:76190200-76193000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:76190200-76193000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr11:76190200-76193000	Strong transcription	Spleen	Spleen
45	chr11:76190200-76193200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:76190200-76193600	Strong transcription	Placenta	Placenta
47	chr11:76190200-76193800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:76190200-76193800	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr11:76190400-76192200	Strong transcription	Gastric	stomach
50	chr11:76190400-76192200	Strong transcription	Pancreas	Pancrea

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