Variant report

Variant	rs11236782
Chromosome Location	chr11:76264749-76264750
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76261079..76263436-chr11:76264364..76265867,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11236760	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11236768	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11236769	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272506	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283862	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12284254	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76230000-76265600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:76254800-76265800	Weak transcription	Fetal Heart	heart
3	chr11:76254800-76269800	Weak transcription	NHDF-Ad	bronchial
4	chr11:76255200-76265200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:76256000-76264800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:76256000-76265400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:76256000-76266400	Weak transcription	A549	lung
8	chr11:76256000-76273400	Weak transcription	Psoas Muscle	Psoas
9	chr11:76256200-76265800	Weak transcription	Colonic Mucosa	Colon
10	chr11:76256200-76265800	Weak transcription	Fetal Brain Male	brain
11	chr11:76257200-76266400	Weak transcription	Brain Angular Gyrus	brain
12	chr11:76257200-76266600	Weak transcription	Small Intestine	intestine
13	chr11:76257200-76270200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:76257200-76272200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:76257400-76264800	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:76257400-76265600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:76257400-76265800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:76257400-76267800	Weak transcription	Esophagus	oesophagus
19	chr11:76257400-76269800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:76257400-76269800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:76257400-76270600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:76257400-76270800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:76257400-76271000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:76257400-76271000	Weak transcription	HSMMtube	muscle
25	chr11:76257400-76271000	Weak transcription	NHEK	skin
26	chr11:76257400-76271800	Weak transcription	Lung	lung
27	chr11:76257400-76272200	Weak transcription	Spleen	Spleen
28	chr11:76257400-76272400	Weak transcription	Ovary	ovary
29	chr11:76257600-76265200	Weak transcription	Fetal Kidney	kidney
30	chr11:76257800-76264800	Weak transcription	Fetal Intestine Large	intestine
31	chr11:76257800-76271400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:76258000-76270600	Weak transcription	Brain Substantia Nigra	brain
33	chr11:76258200-76270600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:76258400-76266600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:76258400-76270600	Weak transcription	Adipose Nuclei	Adipose
36	chr11:76258400-76270600	Weak transcription	NH-A	brain
37	chr11:76258600-76271600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr11:76259000-76265200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:76259200-76271000	Weak transcription	Left Ventricle	heart
40	chr11:76259600-76271200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:76259800-76271200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:76260200-76264800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr11:76260400-76265000	Weak transcription	Fetal Lung	lung
44	chr11:76260600-76271000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:76261000-76266000	Enhancers	HUVEC	blood vessel
46	chr11:76261400-76265000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:76261400-76266400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:76261400-76266400	Weak transcription	Aorta	Aorta
49	chr11:76261400-76268600	Weak transcription	Fetal Muscle Leg	muscle
50	chr11:76261400-76270000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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