Variant report

Variant	rs11239031
Chromosome Location	chr10:44889371-44889372
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44882608..44885734-chr10:44887032..44891125,3	MCF-7	breast:
2	chr10:44889278..44891908-chr10:45358859..45361394,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11592974	1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs11594377	0.95[EUR][1000 genomes]
rs11595460	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17156193	0.87[EUR][1000 genomes]
rs17540492	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17880777	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17883887	0.92[EUR][1000 genomes]
rs2839679	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2839683	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2839686	0.83[YRI][hapmap]
rs2839687	0.97[EUR][1000 genomes]
rs2839689	0.89[YRI][hapmap];0.95[EUR][1000 genomes]
rs2839690	1.00[CHB][hapmap];0.89[YRI][hapmap];0.95[EUR][1000 genomes]
rs2839692	1.00[CHB][hapmap];0.89[YRI][hapmap];0.95[EUR][1000 genomes]
rs2839695	1.00[CHB][hapmap];0.89[YRI][hapmap];0.93[EUR][1000 genomes]
rs2861441	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2861442	0.83[YRI][hapmap]
rs4087301	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4520554	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4556491	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4556492	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7082547	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7088876	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7092453	1.00[CHB][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72790853	0.93[EUR][1000 genomes]
rs72790854	0.92[EUR][1000 genomes]
rs72790864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72790866	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72790869	0.93[EUR][1000 genomes]
rs7915848	1.00[CHB][hapmap];0.89[YRI][hapmap];0.93[EUR][1000 genomes]
rs7918568	1.00[CHB][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44886600-44891000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44886600-44892000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:44888000-44889800	Enhancers	Fetal Kidney	kidney
4	chr10:44888000-44889800	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr10:44888000-44891000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:44888200-44889800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44888400-44889400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:44888400-44889800	Enhancers	Colon Smooth Muscle	Colon
9	chr10:44888400-44890600	Enhancers	Fetal Intestine Small	intestine
10	chr10:44888800-44889400	Enhancers	Fetal Intestine Large	intestine
11	chr10:44888800-44889800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:44888800-44889800	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:44888800-44890400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr10:44889000-44890000	Enhancers	Colonic Mucosa	Colon
15	chr10:44889200-44890000	Enhancers	Liver	Liver
16	chr10:44889200-44890400	Weak transcription	Fetal Lung	lung

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