Variant report

Variant	rs4520554
Chromosome Location	chr10:44891867-44891868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44889278..44891908-chr10:45358859..45361394,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11239031	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11592974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11594377	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11595460	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17156193	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs17540492	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17880777	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17883887	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2839679	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2839680	0.85[AFR][1000 genomes]
rs2839683	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2839686	0.89[YRI][hapmap]
rs2839687	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2839689	1.00[CEU][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2839690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2839692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2839695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2861441	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2861442	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs4087301	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4556491	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4556492	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7082547	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7088876	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7092453	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7093481	0.80[AFR][1000 genomes]
rs72790853	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72790854	0.90[EUR][1000 genomes]
rs72790861	0.80[AFR][1000 genomes]
rs72790864	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72790866	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72790869	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7915848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7918568	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44886600-44892000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:44890800-44893200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr10:44891000-44892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:44891000-44892400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:44891000-44896000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44891200-44892400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:44891200-44893400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr10:44891800-44892000	Enhancers	Fetal Kidney	kidney
9	chr10:44891800-44892200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:44891800-44892400	Bivalent Enhancer	Fetal Stomach	stomach
11	chr10:44891800-44893400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:44891800-44894200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr10:44891800-44895000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:44891800-44895800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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