Variant report

Variant	rs2861441
Chromosome Location	chr10:44885047-44885048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44882608..44885734-chr10:44887032..44891125,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11239031	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11592974	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11594377	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11595460	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17156193	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17540492	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17880777	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17883887	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17885289	0.84[AFR][1000 genomes]
rs2839679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2839680	0.90[AFR][1000 genomes]
rs2839683	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2839686	0.82[AFR][1000 genomes]
rs2839687	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2839689	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2839690	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2839692	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2839695	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2861442	0.90[AFR][1000 genomes]
rs4087301	0.95[EUR][1000 genomes]
rs4520554	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4556491	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4556492	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7082547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7088876	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7092453	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7093481	0.85[AFR][1000 genomes]
rs72790853	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72790854	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72790861	0.85[AFR][1000 genomes]
rs72790862	0.82[AFR][1000 genomes]
rs72790864	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72790866	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72790869	0.92[EUR][1000 genomes]
rs7915848	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7918568	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054649	chr10:44848921-44889713	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv895091	chr10:44875040-44888130	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895096	chr10:44876586-44886206	Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895097	chr10:44876586-44888130	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44882600-44885800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:44882600-44885800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:44882600-44885800	Weak transcription	HepG2	liver
4	chr10:44882600-44885800	Weak transcription	Osteobl	bone
5	chr10:44882800-44885800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:44882800-44885800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44883800-44886200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:44884000-44885400	Enhancers	Fetal Heart	heart
9	chr10:44884200-44885400	Enhancers	Fetal Muscle Leg	muscle
10	chr10:44884200-44886800	Enhancers	Liver	Liver
11	chr10:44884600-44885200	Enhancers	Fetal Lung	lung
12	chr10:44884600-44885400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:44884600-44885400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:44884800-44885200	Enhancers	Pancreas	Pancrea
15	chr10:44884800-44886400	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:44885000-44885800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:44885000-44886000	Weak transcription	Adipose Nuclei	Adipose
18	chr10:44885000-44886000	Weak transcription	Spleen	Spleen
19	chr10:44885000-44886000	Weak transcription	NHDF-Ad	bronchial
20	chr10:44885000-44886200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:44885000-44886200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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