Variant report
| Variant | rs11239203 |
|---|---|
| Chromosome Location | chr10:45173173-45173174 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:45165354..45168566-chr10:45170027..45173684,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10047285 | 1.00[ASN][1000 genomes] |
| rs10508887 | 1.00[ASN][1000 genomes] |
| rs1077995 | 0.99[ASN][1000 genomes] |
| rs10793554 | 1.00[ASN][1000 genomes] |
| rs10900092 | 0.93[ASN][1000 genomes] |
| rs10900094 | 1.00[ASN][1000 genomes] |
| rs10900097 | 1.00[ASN][1000 genomes] |
| rs10900098 | 1.00[ASN][1000 genomes] |
| rs10900099 | 0.99[ASN][1000 genomes] |
| rs10900104 | 0.99[ASN][1000 genomes] |
| rs11239194 | 1.00[EUR][1000 genomes] |
| rs11239198 | 1.00[EUR][1000 genomes] |
| rs11239200 | 0.97[ASN][1000 genomes] |
| rs11239202 | 1.00[ASN][1000 genomes] |
| rs11239212 | 1.00[ASN][1000 genomes] |
| rs11239220 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11239227 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11239230 | 0.99[ASN][1000 genomes] |
| rs11816488 | 0.93[ASN][1000 genomes] |
| rs12570975 | 0.98[ASN][1000 genomes] |
| rs1325165 | 0.99[ASN][1000 genomes] |
| rs60235930 | 1.00[ASN][1000 genomes] |
| rs7071173 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7071236 | 1.00[ASN][1000 genomes] |
| rs7077918 | 1.00[ASN][1000 genomes] |
| rs7081991 | 0.99[ASN][1000 genomes] |
| rs7082194 | 1.00[ASN][1000 genomes] |
| rs7083361 | 1.00[ASN][1000 genomes] |
| rs7091797 | 0.99[ASN][1000 genomes] |
| rs7100810 | 0.99[ASN][1000 genomes] |
| rs73285791 | 1.00[ASN][1000 genomes] |
| rs73287678 | 0.99[ASN][1000 genomes] |
| rs7902711 | 1.00[ASN][1000 genomes] |
| rs7905953 | 0.99[ASN][1000 genomes] |
| rs7907450 | 0.98[ASN][1000 genomes] |
| rs7910031 | 0.93[ASN][1000 genomes] |
| rs7920528 | 0.97[ASN][1000 genomes] |
| rs879133 | 1.00[ASN][1000 genomes] |
| rs9326520 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422287 | chr10:45044161-45257684 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv831843 | chr10:45084703-45280032 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv525947 | chr10:45163568-45182316 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45156400-45175800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr10:45171400-45174400 | Weak transcription | Aorta | Aorta |
| 3 | chr10:45171400-45177200 | Weak transcription | Fetal Lung | lung |
| 4 | chr10:45172800-45177800 | Weak transcription | Brain Germinal Matrix | brain |
