Variant report

Variant	rs11816488
Chromosome Location	chr10:45163499-45163500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10047285	0.93[ASN][1000 genomes]
rs10508887	0.93[ASN][1000 genomes]
rs10508888	0.96[EUR][1000 genomes]
rs1077995	0.92[ASN][1000 genomes]
rs10793554	0.93[ASN][1000 genomes]
rs10900092	0.98[ASN][1000 genomes]
rs10900094	0.93[ASN][1000 genomes]
rs10900097	0.93[ASN][1000 genomes]
rs10900098	0.93[ASN][1000 genomes]
rs10900099	0.92[ASN][1000 genomes]
rs10900104	0.92[ASN][1000 genomes]
rs11239200	0.90[ASN][1000 genomes]
rs11239202	0.93[ASN][1000 genomes]
rs11239203	0.93[ASN][1000 genomes]
rs11239212	0.93[ASN][1000 genomes]
rs11239220	0.93[ASN][1000 genomes]
rs11239222	0.88[EUR][1000 genomes]
rs11239227	0.91[ASN][1000 genomes]
rs11239230	0.92[ASN][1000 genomes]
rs12098746	0.84[EUR][1000 genomes]
rs12220526	0.88[EUR][1000 genomes]
rs12254934	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12569566	0.93[EUR][1000 genomes]
rs12569855	0.93[EUR][1000 genomes]
rs12570975	0.91[ASN][1000 genomes]
rs12572644	0.93[EUR][1000 genomes]
rs12764414	0.93[EUR][1000 genomes]
rs12768956	0.96[EUR][1000 genomes]
rs12771080	0.93[EUR][1000 genomes]
rs12772796	0.96[EUR][1000 genomes]
rs12783832	0.84[EUR][1000 genomes]
rs12785099	0.96[EUR][1000 genomes]
rs1325165	0.92[ASN][1000 genomes]
rs1383374	0.84[EUR][1000 genomes]
rs17156787	0.96[EUR][1000 genomes]
rs17156829	0.95[EUR][1000 genomes]
rs17501869	0.96[EUR][1000 genomes]
rs17502557	0.95[EUR][1000 genomes]
rs1968850	0.96[EUR][1000 genomes]
rs34093140	0.96[EUR][1000 genomes]
rs34167921	0.96[EUR][1000 genomes]
rs34586920	0.96[EUR][1000 genomes]
rs34893515	0.96[EUR][1000 genomes]
rs35018589	0.93[EUR][1000 genomes]
rs35054029	0.84[EUR][1000 genomes]
rs35125250	0.96[EUR][1000 genomes]
rs35280741	0.96[EUR][1000 genomes]
rs35392689	0.93[EUR][1000 genomes]
rs35878166	0.96[EUR][1000 genomes]
rs35980365	0.96[EUR][1000 genomes]
rs60235930	0.93[ASN][1000 genomes]
rs7069781	0.88[EUR][1000 genomes]
rs7070865	0.93[EUR][1000 genomes]
rs7071173	0.92[ASN][1000 genomes]
rs7071236	0.93[ASN][1000 genomes]
rs7077918	0.93[ASN][1000 genomes]
rs7081991	0.92[ASN][1000 genomes]
rs7082194	0.93[ASN][1000 genomes]
rs7083361	0.93[ASN][1000 genomes]
rs7084823	0.88[EUR][1000 genomes]
rs7091797	0.92[ASN][1000 genomes]
rs7094529	0.93[EUR][1000 genomes]
rs7100810	0.92[ASN][1000 genomes]
rs71494741	0.96[EUR][1000 genomes]
rs71494742	0.93[EUR][1000 genomes]
rs71494744	0.96[EUR][1000 genomes]
rs73285791	0.93[ASN][1000 genomes]
rs73287678	0.92[ASN][1000 genomes]
rs7897547	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7902711	0.93[ASN][1000 genomes]
rs7903994	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7905953	0.92[ASN][1000 genomes]
rs7907450	0.91[ASN][1000 genomes]
rs7910031	0.98[ASN][1000 genomes]
rs7912000	0.95[EUR][1000 genomes]
rs7912289	0.96[EUR][1000 genomes]
rs7916283	0.83[EUR][1000 genomes]
rs7919204	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7920528	0.90[ASN][1000 genomes]
rs879133	0.93[ASN][1000 genomes]
rs899888	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9326520	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45156400-45175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:45161600-45163800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:45162200-45163600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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