Variant report

Variant	rs17156787
Chromosome Location	chr10:45193851-45193852
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10508888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239222	0.84[EUR][1000 genomes]
rs11816488	0.96[EUR][1000 genomes]
rs12098746	0.87[EUR][1000 genomes]
rs12220526	0.84[EUR][1000 genomes]
rs12254934	0.93[EUR][1000 genomes]
rs12569566	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12569855	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12572644	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12764414	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12768956	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771080	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12772796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783832	0.87[EUR][1000 genomes]
rs12785099	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383374	0.87[EUR][1000 genomes]
rs17156829	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17501869	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17502557	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1968850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34093140	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34167921	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34586920	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34893515	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35018589	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35054029	0.87[EUR][1000 genomes]
rs35125250	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35280741	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35392689	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35878166	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35980365	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069781	0.84[EUR][1000 genomes]
rs7070865	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7084823	0.84[EUR][1000 genomes]
rs7094529	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71494741	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494742	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71494744	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897547	0.93[EUR][1000 genomes]
rs7903994	0.93[EUR][1000 genomes]
rs7912000	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912289	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916283	0.86[EUR][1000 genomes]
rs7919204	0.93[EUR][1000 genomes]
rs899888	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17156787	LOC338579	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45192800-45195200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:45193000-45194000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:45193000-45195200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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