Variant report

Variant	rs35280741
Chromosome Location	chr10:45170488-45170489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45165354..45168566-chr10:45170027..45173684,3	K562	blood:
2	chr10:45169027..45172416-chr10:45173196..45176853,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10508888	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11239222	0.84[EUR][1000 genomes]
rs11816488	0.96[EUR][1000 genomes]
rs12098746	0.87[EUR][1000 genomes]
rs12220526	0.84[EUR][1000 genomes]
rs12254934	0.93[EUR][1000 genomes]
rs12569566	0.96[EUR][1000 genomes]
rs12569855	0.96[EUR][1000 genomes]
rs12572644	0.96[EUR][1000 genomes]
rs12764414	0.96[EUR][1000 genomes]
rs12768956	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771080	0.96[EUR][1000 genomes]
rs12772796	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12783832	0.87[EUR][1000 genomes]
rs12785099	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383374	0.87[EUR][1000 genomes]
rs17156787	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17156829	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17501869	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17502557	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1968850	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34093140	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34167921	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34586920	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34893515	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35018589	0.96[EUR][1000 genomes]
rs35054029	0.87[EUR][1000 genomes]
rs35125250	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35392689	0.96[EUR][1000 genomes]
rs35878166	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35980365	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069781	0.84[EUR][1000 genomes]
rs7070865	0.96[EUR][1000 genomes]
rs7084823	0.84[EUR][1000 genomes]
rs7094529	0.96[EUR][1000 genomes]
rs71494741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494742	0.96[EUR][1000 genomes]
rs71494744	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7897547	0.93[EUR][1000 genomes]
rs7903994	0.93[EUR][1000 genomes]
rs7912000	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912289	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916283	0.86[EUR][1000 genomes]
rs7919204	0.93[EUR][1000 genomes]
rs899888	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525947	chr10:45163568-45182316	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45156400-45175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:45168800-45170600	Enhancers	Colon Smooth Muscle	Colon
3	chr10:45168800-45171400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:45169000-45170600	Enhancers	Fetal Stomach	stomach
5	chr10:45169000-45171400	Enhancers	Fetal Muscle Leg	muscle
6	chr10:45169800-45170600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:45169800-45170600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:45169800-45170600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr10:45169800-45171400	Enhancers	Fetal Lung	lung
10	chr10:45170400-45170600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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