Variant report

Variant	rs12569855
Chromosome Location	chr10:45196285-45196286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45194571..45197405-chr10:45201059..45202685,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10508888	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11239211	0.99[ASN][1000 genomes]
rs11239222	0.88[EUR][1000 genomes]
rs11816488	0.93[EUR][1000 genomes]
rs12098746	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12220526	0.88[EUR][1000 genomes]
rs12254934	0.97[EUR][1000 genomes]
rs12569373	0.92[ASN][1000 genomes]
rs12569566	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12569644	0.91[ASN][1000 genomes]
rs12570392	0.92[ASN][1000 genomes]
rs12572644	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12573461	0.94[ASN][1000 genomes]
rs12764414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768956	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12771080	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772796	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12783832	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12785099	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1383374	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17156787	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17156829	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17501869	0.96[EUR][1000 genomes]
rs17502557	0.95[EUR][1000 genomes]
rs1968850	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34093140	0.96[EUR][1000 genomes]
rs34167921	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34586920	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34893515	0.96[EUR][1000 genomes]
rs35018589	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35054029	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35125250	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35280741	0.96[EUR][1000 genomes]
rs35392689	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35878166	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35980365	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60493254	0.91[ASN][1000 genomes]
rs60593524	0.92[ASN][1000 genomes]
rs7069781	0.88[EUR][1000 genomes]
rs7070865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084823	0.88[EUR][1000 genomes]
rs7094529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494741	0.96[EUR][1000 genomes]
rs71494742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71494744	0.96[EUR][1000 genomes]
rs7897547	0.97[EUR][1000 genomes]
rs7903994	0.97[EUR][1000 genomes]
rs7912000	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7912289	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7916283	0.89[EUR][1000 genomes]
rs7919204	0.97[EUR][1000 genomes]
rs899888	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2750893	chr10:45195185-45356594	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039167	chr10:45195541-45357798	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046534	chr10:45196274-45357798	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45195600-45199000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links