Variant report

Variant	rs11239211
Chromosome Location	chr10:45193587-45193588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150549652..150550394-chr10:45193275..45193794,2	Hela-S3	cervix:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10736830	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10751358	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10793552	0.95[EUR][1000 genomes]
rs12098746	0.97[ASN][1000 genomes]
rs12245478	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12266496	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12569373	0.91[ASN][1000 genomes]
rs12569566	0.97[ASN][1000 genomes]
rs12569644	0.91[ASN][1000 genomes]
rs12569855	0.99[ASN][1000 genomes]
rs12570392	0.91[ASN][1000 genomes]
rs12572644	0.92[ASN][1000 genomes]
rs12573461	0.93[ASN][1000 genomes]
rs12764414	0.99[ASN][1000 genomes]
rs12771080	0.99[ASN][1000 genomes]
rs12783832	0.95[ASN][1000 genomes]
rs1383374	0.99[ASN][1000 genomes]
rs1480603	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1600614	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35018589	0.99[ASN][1000 genomes]
rs35054029	0.97[ASN][1000 genomes]
rs35392689	0.97[ASN][1000 genomes]
rs60493254	0.91[ASN][1000 genomes]
rs60593524	0.91[ASN][1000 genomes]
rs6593436	0.97[EUR][1000 genomes]
rs7068119	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7070865	0.99[ASN][1000 genomes]
rs7085278	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7088688	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7094529	0.99[ASN][1000 genomes]
rs7097094	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7098668	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71494742	0.99[ASN][1000 genomes]
rs7893447	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7907854	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7910031	0.92[EUR][1000 genomes]
rs999473	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11239211	ZNF32	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45192800-45195200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:45193000-45194000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:45193000-45195200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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