Variant report

Variant	rs1480603
Chromosome Location	chr10:45197977-45197978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10736830	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793552	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793555	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10793557	0.81[ASN][1000 genomes]
rs10900092	0.80[EUR][1000 genomes]
rs10900100	0.82[ASN][1000 genomes]
rs10900103	0.82[ASN][1000 genomes]
rs10900105	0.82[ASN][1000 genomes]
rs11239211	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11239222	0.86[ASN][1000 genomes]
rs11239228	0.82[ASN][1000 genomes]
rs11239229	0.82[ASN][1000 genomes]
rs11239231	0.82[ASN][1000 genomes]
rs12220526	0.87[ASN][1000 genomes]
rs12245478	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12254934	0.99[ASN][1000 genomes]
rs12261103	0.82[ASN][1000 genomes]
rs12266496	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1480604	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1600614	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17156847	0.82[ASN][1000 genomes]
rs17156852	0.81[ASN][1000 genomes]
rs2069046	0.82[ASN][1000 genomes]
rs4459245	0.81[ASN][1000 genomes]
rs6593436	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6593437	0.81[ASN][1000 genomes]
rs7068119	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7069781	0.88[ASN][1000 genomes]
rs7070255	0.82[ASN][1000 genomes]
rs7070868	0.82[ASN][1000 genomes]
rs7084823	0.87[ASN][1000 genomes]
rs7085278	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088026	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7088366	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7088688	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091495	0.82[ASN][1000 genomes]
rs7092823	0.81[ASN][1000 genomes]
rs7097094	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7098668	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73287673	0.82[ASN][1000 genomes]
rs7893447	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7895327	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7897547	0.98[ASN][1000 genomes]
rs7903994	0.98[ASN][1000 genomes]
rs7905942	0.82[ASN][1000 genomes]
rs7907854	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910031	0.93[EUR][1000 genomes]
rs7917498	0.82[ASN][1000 genomes]
rs7919204	0.98[ASN][1000 genomes]
rs899888	0.99[ASN][1000 genomes]
rs999473	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2750893	chr10:45195185-45356594	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1039167	chr10:45195541-45357798	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1046534	chr10:45196274-45357798	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45195600-45199000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:45197000-45199200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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