Variant report
| Variant | rs7068119 |
|---|---|
| Chromosome Location | chr10:45195185-45195186 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:45194571..45197405-chr10:45201059..45202685,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10736830 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10751358 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10793552 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10900092 | 0.80[EUR][1000 genomes] |
| rs10900101 | 0.80[ASN][1000 genomes] |
| rs10900106 | 0.83[ASN][1000 genomes] |
| rs11239211 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12245478 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12266496 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1325163 | 0.83[ASN][1000 genomes] |
| rs1480603 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1600614 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6593436 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7085278 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7088688 | 0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7097094 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7098668 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7893447 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7907854 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7910031 | 0.93[EUR][1000 genomes] |
| rs999473 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422287 | chr10:45044161-45257684 | Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv831843 | chr10:45084703-45280032 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2750893 | chr10:45195185-45356594 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7068119 | ZNF32 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45192800-45195200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 2 | chr10:45193000-45195200 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
