Variant report

Variant	rs12266496
Chromosome Location	chr10:45169414-45169415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45169027..45172416-chr10:45173196..45176853,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10736830	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751358	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793552	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793555	0.83[ASN][1000 genomes]
rs10793557	0.81[ASN][1000 genomes]
rs10900092	0.82[EUR][1000 genomes]
rs10900100	0.82[ASN][1000 genomes]
rs10900103	0.82[ASN][1000 genomes]
rs10900105	0.81[ASN][1000 genomes]
rs11239211	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11239222	0.85[ASN][1000 genomes]
rs11239228	0.81[ASN][1000 genomes]
rs11239229	0.81[ASN][1000 genomes]
rs11239231	0.81[ASN][1000 genomes]
rs12220526	0.87[ASN][1000 genomes]
rs12245478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12254934	0.97[ASN][1000 genomes]
rs12261103	0.81[ASN][1000 genomes]
rs1480603	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1480604	0.83[ASN][1000 genomes]
rs1600614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17156847	0.82[ASN][1000 genomes]
rs2069046	0.81[ASN][1000 genomes]
rs4459245	0.81[ASN][1000 genomes]
rs6593436	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6593437	0.81[ASN][1000 genomes]
rs7068119	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7069781	0.86[ASN][1000 genomes]
rs7070255	0.81[ASN][1000 genomes]
rs7070868	0.81[ASN][1000 genomes]
rs7084823	0.87[ASN][1000 genomes]
rs7085278	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088026	0.83[ASN][1000 genomes]
rs7088366	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7088688	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7091495	0.82[ASN][1000 genomes]
rs7092823	0.81[ASN][1000 genomes]
rs7097094	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7098668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73287673	0.82[ASN][1000 genomes]
rs7893447	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7895327	0.82[ASN][1000 genomes]
rs7897547	0.99[ASN][1000 genomes]
rs7903994	0.99[ASN][1000 genomes]
rs7905942	0.81[ASN][1000 genomes]
rs7907854	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910031	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7917498	0.82[ASN][1000 genomes]
rs7919204	0.99[ASN][1000 genomes]
rs899888	0.97[ASN][1000 genomes]
rs999473	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525947	chr10:45163568-45182316	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45156400-45175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:45168800-45170600	Enhancers	Colon Smooth Muscle	Colon
3	chr10:45168800-45171400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:45169000-45170400	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:45169000-45170600	Enhancers	Fetal Stomach	stomach
6	chr10:45169000-45171400	Enhancers	Fetal Muscle Leg	muscle
7	chr10:45169200-45170000	Enhancers	Ovary	ovary
8	chr10:45169200-45170000	Enhancers	Stomach Smooth Muscle	stomach
9	chr10:45169400-45170400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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