Variant report

Variant	rs7903994
Chromosome Location	chr10:45177834-45177835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45173246..45175048-chr10:45176578..45179846,3	K562	blood:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10508888	0.93[EUR][1000 genomes]
rs10736830	0.96[ASN][1000 genomes]
rs10751358	0.98[ASN][1000 genomes]
rs10793552	0.90[ASN][1000 genomes]
rs10793555	0.81[ASN][1000 genomes]
rs10793557	0.81[ASN][1000 genomes]
rs10900100	0.82[ASN][1000 genomes]
rs10900103	0.82[ASN][1000 genomes]
rs10900105	0.81[ASN][1000 genomes]
rs11239222	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11239228	0.81[ASN][1000 genomes]
rs11239229	0.81[ASN][1000 genomes]
rs11239231	0.81[ASN][1000 genomes]
rs11816488	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12098746	0.87[EUR][1000 genomes]
rs12220526	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12245478	0.99[ASN][1000 genomes]
rs12254934	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12261103	0.81[ASN][1000 genomes]
rs12266496	0.99[ASN][1000 genomes]
rs12569566	0.97[EUR][1000 genomes]
rs12569855	0.97[EUR][1000 genomes]
rs12572644	0.97[EUR][1000 genomes]
rs12764414	0.97[EUR][1000 genomes]
rs12768956	0.93[EUR][1000 genomes]
rs12771080	0.97[EUR][1000 genomes]
rs12772796	0.93[EUR][1000 genomes]
rs12783832	0.87[EUR][1000 genomes]
rs12785099	0.93[EUR][1000 genomes]
rs1383374	0.87[EUR][1000 genomes]
rs1480603	0.98[ASN][1000 genomes]
rs1480604	0.81[ASN][1000 genomes]
rs1600614	0.99[ASN][1000 genomes]
rs17156787	0.93[EUR][1000 genomes]
rs17156829	0.92[EUR][1000 genomes]
rs17156847	0.82[ASN][1000 genomes]
rs17501869	0.93[EUR][1000 genomes]
rs17502557	0.92[EUR][1000 genomes]
rs1968850	0.93[EUR][1000 genomes]
rs2069046	0.81[ASN][1000 genomes]
rs34093140	0.93[EUR][1000 genomes]
rs34167921	0.93[EUR][1000 genomes]
rs34586920	0.93[EUR][1000 genomes]
rs34893515	0.93[EUR][1000 genomes]
rs35018589	0.97[EUR][1000 genomes]
rs35054029	0.87[EUR][1000 genomes]
rs35125250	0.93[EUR][1000 genomes]
rs35280741	0.93[EUR][1000 genomes]
rs35392689	0.97[EUR][1000 genomes]
rs35878166	0.93[EUR][1000 genomes]
rs35980365	0.93[EUR][1000 genomes]
rs4459245	0.81[ASN][1000 genomes]
rs6593436	0.80[ASN][1000 genomes]
rs6593437	0.81[ASN][1000 genomes]
rs7069781	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7070255	0.81[ASN][1000 genomes]
rs7070865	0.97[EUR][1000 genomes]
rs7084823	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7085278	0.99[ASN][1000 genomes]
rs7088026	0.81[ASN][1000 genomes]
rs7088366	0.97[ASN][1000 genomes]
rs7088688	0.99[ASN][1000 genomes]
rs7091495	0.82[ASN][1000 genomes]
rs7092823	0.81[ASN][1000 genomes]
rs7094529	0.97[EUR][1000 genomes]
rs7097094	0.95[ASN][1000 genomes]
rs7098668	0.99[ASN][1000 genomes]
rs71494741	0.93[EUR][1000 genomes]
rs71494742	0.97[EUR][1000 genomes]
rs71494744	0.93[EUR][1000 genomes]
rs73287673	0.82[ASN][1000 genomes]
rs7895327	0.81[ASN][1000 genomes]
rs7897547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905942	0.81[ASN][1000 genomes]
rs7907854	0.98[ASN][1000 genomes]
rs7912000	0.92[EUR][1000 genomes]
rs7912289	0.93[EUR][1000 genomes]
rs7916283	0.86[EUR][1000 genomes]
rs7917498	0.82[ASN][1000 genomes]
rs7919204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899888	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525947	chr10:45163568-45182316	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45176200-45178200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr10:45176200-45185800	Weak transcription	Aorta	Aorta
3	chr10:45176400-45178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:45177200-45178200	Enhancers	Fetal Lung	lung
5	chr10:45177400-45178800	Enhancers	Fetal Heart	heart
6	chr10:45177600-45178800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:45177600-45179000	Enhancers	Ovary	ovary
8	chr10:45177800-45178000	Enhancers	Fetal Kidney	kidney
9	chr10:45177800-45178200	Enhancers	Brain Germinal Matrix	brain
10	chr10:45177800-45178600	Enhancers	Duodenum Smooth Muscle	Duodenum

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