Variant report

Variant rs11242740
Chromosome Location chr6:2129779-2129780
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:2081600-2131800 Weak transcription Fetal Intestine Small intestine
2 chr6:2104400-2132000 Weak transcription Fetal Intestine Large intestine
3 chr6:2109600-2133600 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr6:2114200-2134200 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr6:2116000-2134200 Weak transcription H9 Cell Line embryonic stem cell
6 chr6:2118000-2131800 Weak transcription Duodenum Mucosa Duodenum
7 chr6:2119600-2132600 Weak transcription NHEK skin
8 chr6:2123600-2134000 Weak transcription Gastric stomach
9 chr6:2125000-2134000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr6:2125000-2134000 Weak transcription Pancreas Pancrea
11 chr6:2126400-2130000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr6:2126400-2130200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr6:2127000-2130800 Enhancers Primary hematopoietic stem cells blood
14 chr6:2128000-2134400 Weak transcription Right Atrium heart
15 chr6:2128000-2160800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr6:2128200-2130000 Enhancers Primary hematopoietic stem cells short term culture blood
17 chr6:2128400-2129800 Enhancers Primary T helper cells PMA-I stimulated --
18 chr6:2128400-2132200 Weak transcription HUVEC blood vessel
19 chr6:2129000-2129800 Enhancers Primary T helper naive cells from peripheral blood blood
20 chr6:2129000-2130000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
21 chr6:2129000-2130200 Flanking Active TSS GM12878-XiMat blood
22 chr6:2129200-2129800 Enhancers HepG2 liver
23 chr6:2129200-2130000 Enhancers iPS-20b Cell Line embryonic stem cell
24 chr6:2129200-2130800 Enhancers iPS-18 Cell Line embryonic stem cell
25 chr6:2129400-2129800 Enhancers Primary T helper naive cells fromperipheralblood blood
26 chr6:2129400-2129800 Enhancers Primary T killer naive cells fromperipheralblood blood
27 chr6:2129400-2130200 Enhancers HUES48 Cell Line embryonic stem cell
28 chr6:2129400-2130200 Enhancers HUES64 Cell Line embryonic stem cell
29 chr6:2129600-2129800 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
30 chr6:2129600-2129800 Enhancers Fetal Thymus thymus
31 chr6:2129600-2130000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr6:2129600-2130200 Enhancers ES-I3 Cell Line embryonic stem cell
33 chr6:2129600-2130200 Enhancers H1 Cell Line embryonic stem cell
34 chr6:2129600-2130200 Enhancers iPS-15b Cell Line embryonic stem cell
35 chr6:2129600-2130800 Enhancers HUES6 Cell Line embryonic stem cell
36 chr6:2129600-2131800 Weak transcription Small Intestine intestine
37 chr6:2129600-2132600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr6:2129600-2134000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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