Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:4425094-4425386	HepG2	liver:	n/a	n/a
2	FOXA2	chr10:4425006-4425362	HepG2	liver:	n/a	n/a
3	FOXA1	chr10:4424904-4425386	HepG2	liver:	n/a	n/a
4	ARID3A	chr10:4425066-4425300	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
LINC00703	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10508281	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10904237	0.82[ASN][1000 genomes]
rs10904245	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904247	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11252478	0.80[ASN][1000 genomes]
rs11252482	0.81[ASN][1000 genomes]
rs11252491	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11252496	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12217939	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12569665	0.90[ASN][1000 genomes]
rs1468064	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1468065	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1926808	0.84[ASN][1000 genomes]
rs1926809	0.83[ASN][1000 genomes]
rs2025773	0.87[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2025775	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2182586	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4881317	0.80[EUR][1000 genomes]
rs61829444	0.85[ASN][1000 genomes]
rs7095975	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894786	chr10:4385379-4441989	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11252503	PITRM1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4424200-4425600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:4424400-4425400	Weak transcription	Fetal Brain Male	brain
3	chr10:4425000-4425600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:4425000-4425600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:4425000-4425800	Enhancers	NHDF-Ad	bronchial
6	chr10:4425000-4426000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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