Variant report

Variant	rs1926808
Chromosome Location	chr10:4401589-4401590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4394419..4396043-chr10:4399744..4402367,2	MCF-7	breast:
2	chr10:4401002..4403456-chr10:4404733..4406586,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508281	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904237	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904238	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10904244	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10904245	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10904247	0.89[CEU][hapmap];0.88[TSI][hapmap]
rs11252474	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11252476	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11252477	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11252478	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11252482	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11252491	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11252496	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11252503	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs12217543	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12217939	0.87[ASN][1000 genomes]
rs12219673	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12569665	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12782979	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1926809	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2025773	0.81[CHB][hapmap];0.87[ASN][1000 genomes]
rs2025774	0.89[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2025775	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182586	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4881317	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60075506	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61829444	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601840	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7082820	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72766472	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs927897	0.80[ASN][1000 genomes]
rs9633757	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894786	chr10:4385379-4441989	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4397400-4402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:4400200-4402200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:4400800-4401800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:4401000-4401600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:4401000-4401600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:4401200-4401600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:4401400-4402000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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