Variant report
| Variant | rs10904244 |
|---|---|
| Chromosome Location | chr10:4420258-4420259 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:4418800..4420743-chr10:4426495..4428443,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10508281 | 0.84[AMR][1000 genomes] |
| rs10904237 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10904242 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10904243 | 0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10904245 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11252476 | 0.81[EUR][1000 genomes] |
| rs11252478 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11252482 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11252491 | 0.82[AMR][1000 genomes] |
| rs11252496 | 0.84[AMR][1000 genomes] |
| rs12217543 | 0.81[EUR][1000 genomes] |
| rs12217939 | 0.81[ASN][1000 genomes] |
| rs12219673 | 0.81[EUR][1000 genomes] |
| rs12569665 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1926808 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1926809 | 0.81[EUR][1000 genomes] |
| rs2025773 | 0.81[ASN][1000 genomes] |
| rs2025774 | 0.81[ASN][1000 genomes] |
| rs2025775 | 0.82[ASN][1000 genomes] |
| rs2182586 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4881317 | 0.81[EUR][1000 genomes] |
| rs60075506 | 0.81[EUR][1000 genomes] |
| rs61829444 | 0.81[EUR][1000 genomes] |
| rs6601840 | 0.81[EUR][1000 genomes] |
| rs7082820 | 0.81[EUR][1000 genomes] |
| rs72766472 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894786 | chr10:4385379-4441989 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv894787 | chr10:4385379-4857717 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:4416200-4424000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
