Variant report

Variant	rs6601840
Chromosome Location	chr10:4397156-4397157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4391538..4393458-chr10:4395405..4398270,2	K562	blood:
2	chr1:207494272..207494928-chr10:4396440..4397189,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1E2-3	chr10:4396782-4397192	XLOC_008360

Variant related genes	Relation type
ENSG00000196352	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508281	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10751967	0.80[EUR][1000 genomes]
rs10904237	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10904238	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10904244	0.81[EUR][1000 genomes]
rs10904245	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11252476	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11252477	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11252478	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11252482	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252491	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11252496	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12217543	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12217939	0.83[ASN][1000 genomes]
rs12219673	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569665	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12782979	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1926808	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1926809	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2025773	0.83[ASN][1000 genomes]
rs2025774	0.83[ASN][1000 genomes]
rs2025775	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2182586	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4265499	0.80[EUR][1000 genomes]
rs4272695	0.80[EUR][1000 genomes]
rs4550130	0.80[EUR][1000 genomes]
rs4881317	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60075506	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61829444	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7082820	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72766472	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs927897	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894786	chr10:4385379-4441989	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4393800-4397200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:4393800-4397200	Enhancers	NH-A	brain
3	chr10:4393800-4398000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4394600-4397400	Enhancers	Fetal Heart	heart
5	chr10:4394800-4399000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:4395000-4397200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:4395200-4397200	Enhancers	Osteobl	bone
8	chr10:4395200-4398200	Enhancers	HMEC	breast
9	chr10:4395400-4397200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:4395400-4401200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:4396000-4397400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:4396000-4397400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:4396400-4397200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:4396400-4397200	Flanking Active TSS	Hela-S3	cervix
15	chr10:4396600-4397200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:4396600-4397200	Enhancers	Aorta	Aorta
17	chr10:4396600-4397400	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr10:4396600-4397800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:4396800-4397200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr10:4396800-4397200	Flanking Active TSS	NHEK	skin
21	chr10:4396800-4397400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:4396800-4398200	Enhancers	HUVEC	blood vessel
23	chr10:4397000-4397200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:4397000-4397400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:4397000-4398200	Enhancers	A549	lung
26	chr10:4397000-4400200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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