Variant report

Variant	rs10751967
Chromosome Location	chr10:4386689-4386690
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10795157	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10795158	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10904235	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10904236	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904237	0.82[ASN][1000 genomes]
rs10904238	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11252474	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252476	0.88[ASN][1000 genomes]
rs11252477	0.88[ASN][1000 genomes]
rs11252478	0.80[ASN][1000 genomes]
rs12217543	0.88[ASN][1000 genomes]
rs12219673	0.91[ASN][1000 genomes]
rs12782979	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1571129	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4261192	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4265499	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272695	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4550130	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4564225	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4881317	0.83[ASN][1000 genomes]
rs60075506	0.88[ASN][1000 genomes]
rs61829444	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6601835	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6601836	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601840	0.80[EUR][1000 genomes]
rs7082820	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72766472	0.91[ASN][1000 genomes]
rs7900466	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902863	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7919885	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs927897	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9633757	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894786	chr10:4385379-4441989	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4382400-4389800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4385200-4387800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:4385200-4388000	Enhancers	Fetal Lung	lung
4	chr10:4385400-4387600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:4385400-4387600	Enhancers	Fetal Muscle Leg	muscle
6	chr10:4386000-4387600	Enhancers	Placenta	Placenta
7	chr10:4386000-4387600	Enhancers	Osteobl	bone
8	chr10:4386000-4388000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:4386000-4388000	Enhancers	HMEC	breast
10	chr10:4386000-4388200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:4386000-4388400	Enhancers	Fetal Heart	heart
12	chr10:4386000-4388600	Enhancers	NHLF	lung
13	chr10:4386000-4388800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:4386000-4388800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:4386000-4388800	Enhancers	NHDF-Ad	bronchial
16	chr10:4386200-4386800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:4386200-4386800	Enhancers	Aorta	Aorta
18	chr10:4386200-4386800	Enhancers	Fetal Intestine Large	intestine
19	chr10:4386200-4387400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:4386200-4387600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:4386200-4387600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:4386200-4387600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:4386200-4387600	Enhancers	Brain Hippocampus Middle	brain
24	chr10:4386200-4387600	Enhancers	Psoas Muscle	Psoas
25	chr10:4386200-4387600	Enhancers	NH-A	brain
26	chr10:4386200-4387800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr10:4386200-4387800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:4386200-4388400	Enhancers	Fetal Stomach	stomach
29	chr10:4386200-4388600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:4386200-4388600	Enhancers	Rectal Smooth Muscle	rectum
31	chr10:4386200-4388800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:4386400-4386800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:4386400-4386800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr10:4386400-4386800	Flanking Active TSS	Hela-S3	cervix
35	chr10:4386400-4386800	Flanking Active TSS	HSMM	muscle
36	chr10:4386400-4386800	Flanking Active TSS	HSMMtube	muscle
37	chr10:4386400-4386800	Flanking Active TSS	NHEK	skin
38	chr10:4386400-4387000	Enhancers	Fetal Intestine Small	intestine
39	chr10:4386400-4387200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:4386400-4387200	Flanking Active TSS	A549	lung
41	chr10:4386400-4387400	Weak transcription	Brain Anterior Caudate	brain
42	chr10:4386400-4387600	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr10:4386600-4387000	Enhancers	H9 Cell Line	embryonic stem cell
44	chr10:4386600-4387000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr10:4386600-4387000	Active TSS	Stomach Smooth Muscle	stomach
46	chr10:4386600-4387400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr10:4386600-4387400	Enhancers	H1 Cell Line	embryonic stem cell
48	chr10:4386600-4387400	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr10:4386600-4387600	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr10:4386600-4387600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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